miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 18067 0.71 0.155371
Target:  5'- aGUGGCcgcauGGGCuGcGGgGCCCACcggaGCCGCCc -3'
miRNA:   3'- -UACUG-----CCCGuC-CCgCGGGUG----CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 22381 1.09 0.00017
Target:  5'- cAUGACGGGCAGGGCGCCCACGCCGCCa -3'
miRNA:   3'- -UACUGCCCGUCCCGCGGGUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 45365 0.78 0.040492
Target:  5'- --cACGGGCGGGGCGUCCgguGCUGCCa -3'
miRNA:   3'- uacUGCCCGUCCCGCGGGug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 60536 0.72 0.120267
Target:  5'- -aGACGGGCcgaAGGGUagUCACGCCGCa -3'
miRNA:   3'- uaCUGCCCG---UCCCGcgGGUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 62410 0.71 0.15148
Target:  5'- cUGGCauGGCuGGGCGCCgACaCCGCCc -3'
miRNA:   3'- uACUGc-CCGuCCCGCGGgUGcGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39244 0.7 0.159352
Target:  5'- -cGcCGcGGCaAGGGCGCCaaggGCCGCCg -3'
miRNA:   3'- uaCuGC-CCG-UCCCGCGGgug-CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 16522 0.7 0.167591
Target:  5'- gAUGGCGGGUGGcGGCaacggucCCCACgGCgGCCg -3'
miRNA:   3'- -UACUGCCCGUC-CCGc------GGGUG-CGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 34712 0.66 0.335247
Target:  5'- gGUG-CGGGCuuGGGaauuCCCGCgcgcuucgGCCGCCg -3'
miRNA:   3'- -UACuGCCCGu-CCCgc--GGGUG--------CGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 2918 0.66 0.335247
Target:  5'- -gGGCcuGGCuGGGCGacggcaccgCCACGCgCGCCg -3'
miRNA:   3'- uaCUGc-CCGuCCCGCg--------GGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 14449 0.69 0.199499
Target:  5'- --cGCGaGGCGGaGGCGaacgCCGCGCgCGCCg -3'
miRNA:   3'- uacUGC-CCGUC-CCGCg---GGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 14484 0.69 0.209543
Target:  5'- -cGcCGaGCAGGGCGCgCugGUgGCCg -3'
miRNA:   3'- uaCuGCcCGUCCCGCGgGugCGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 25238 0.69 0.209543
Target:  5'- -cGGCGGcCAuGGCGCCCGCGgCGgCg -3'
miRNA:   3'- uaCUGCCcGUcCCGCGGGUGCgGCgG- -5'
18283 3' -65.2 NC_004681.1 + 16026 0.66 0.306265
Target:  5'- -cGGCugcuGGCaAGGGCGCCgC-CGCUGUCa -3'
miRNA:   3'- uaCUGc---CCG-UCCCGCGG-GuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 7317 0.66 0.306265
Target:  5'- -cGACGuuccacccccGGCacccGGGGCuGaCCC-CGCCGCCg -3'
miRNA:   3'- uaCUGC----------CCG----UCCCG-C-GGGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 17952 0.66 0.319064
Target:  5'- -cGA-GGGCGgcuccguGGGCcaccgcaGCCCAUGCgGCCa -3'
miRNA:   3'- uaCUgCCCGU-------CCCG-------CGGGUGCGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 21424 0.66 0.320511
Target:  5'- ---cUGGGCAaGGUGCUgGCGCCGUUc -3'
miRNA:   3'- uacuGCCCGUcCCGCGGgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 66936 0.66 0.335247
Target:  5'- uGUGGCGGcCcuGGUGCCgCGCGCCGa- -3'
miRNA:   3'- -UACUGCCcGucCCGCGG-GUGCGGCgg -5'
18283 3' -65.2 NC_004681.1 + 5702 0.67 0.25415
Target:  5'- cUGACGGGCuGGaGCGCggCC-UGUCGCUc -3'
miRNA:   3'- uACUGCCCGuCC-CGCG--GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 7260 0.68 0.248173
Target:  5'- -cGACGcGGCcguccaccucGGCGCCgaguGCGCCGCCu -3'
miRNA:   3'- uaCUGC-CCGuc--------CCGCGGg---UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 39840 0.68 0.236569
Target:  5'- --cGCGcGCAccGCGCCCGCGCgCGCCa -3'
miRNA:   3'- uacUGCcCGUccCGCGGGUGCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.