Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18283 | 3' | -65.2 | NC_004681.1 | + | 21424 | 0.66 | 0.320511 |
Target: 5'- ---cUGGGCAaGGUGCUgGCGCCGUUc -3' miRNA: 3'- uacuGCCCGUcCCGCGGgUGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 17952 | 0.66 | 0.319064 |
Target: 5'- -cGA-GGGCGgcuccguGGGCcaccgcaGCCCAUGCgGCCa -3' miRNA: 3'- uaCUgCCCGU-------CCCG-------CGGGUGCGgCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 59649 | 0.66 | 0.313327 |
Target: 5'- --aGCGGGCGuccgaagcgguGGGCuuccaGCCaacauggcaGCGCCGCCa -3' miRNA: 3'- uacUGCCCGU-----------CCCG-----CGGg--------UGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 16026 | 0.66 | 0.306265 |
Target: 5'- -cGGCugcuGGCaAGGGCGCCgC-CGCUGUCa -3' miRNA: 3'- uaCUGc---CCG-UCCCGCGG-GuGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 7317 | 0.66 | 0.306265 |
Target: 5'- -cGACGuuccacccccGGCacccGGGGCuGaCCC-CGCCGCCg -3' miRNA: 3'- uaCUGC----------CCG----UCCCG-C-GGGuGCGGCGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 27687 | 0.67 | 0.279241 |
Target: 5'- -gGugGuGGUGGuGGCGCCUACGuuaaCCGCa -3' miRNA: 3'- uaCugC-CCGUC-CCGCGGGUGC----GGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 63851 | 0.67 | 0.279241 |
Target: 5'- ---cCGGGC-GGGCcuuGCCuCGCGCCGUg -3' miRNA: 3'- uacuGCCCGuCCCG---CGG-GUGCGGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 2606 | 0.67 | 0.272789 |
Target: 5'- -aGAUGGGUgacauccaagucGGGGauuaCGUUCACGCCGCg -3' miRNA: 3'- uaCUGCCCG------------UCCC----GCGGGUGCGGCGg -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 3397 | 0.67 | 0.260244 |
Target: 5'- -aGAaguuGGCcGcGGCGCCCGCGCgaGCCa -3' miRNA: 3'- uaCUgc--CCGuC-CCGCGGGUGCGg-CGG- -5' |
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18283 | 3' | -65.2 | NC_004681.1 | + | 59009 | 0.75 | 0.075013 |
Target: 5'- -cGugGGGgAGGGCGCCCA--CCGCg -3' miRNA: 3'- uaCugCCCgUCCCGCGGGUgcGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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