miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18283 3' -65.2 NC_004681.1 + 17397 0.67 0.285152
Target:  5'- --cGCGGGCAcgcgcgccagcaGGGCGUcgucuccgggauaCC-CGCCGCCc -3'
miRNA:   3'- uacUGCCCGU------------CCCGCG-------------GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 63851 0.67 0.279241
Target:  5'- ---cCGGGC-GGGCcuuGCCuCGCGCCGUg -3'
miRNA:   3'- uacuGCCCGuCCCG---CGG-GUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 27687 0.67 0.279241
Target:  5'- -gGugGuGGUGGuGGCGCCUACGuuaaCCGCa -3'
miRNA:   3'- uaCugC-CCGUC-CCGCGGGUGC----GGCGg -5'
18283 3' -65.2 NC_004681.1 + 43758 0.67 0.279241
Target:  5'- -cGGCGGGCugaAGGGCGaggUACGaaGCCa -3'
miRNA:   3'- uaCUGCCCG---UCCCGCgg-GUGCggCGG- -5'
18283 3' -65.2 NC_004681.1 + 2606 0.67 0.272789
Target:  5'- -aGAUGGGUgacauccaagucGGGGauuaCGUUCACGCCGCg -3'
miRNA:   3'- uaCUGCCCG------------UCCC----GCGGGUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 40736 0.67 0.26583
Target:  5'- cGUGGCGGaGUagcugggagAGGGCGgCCaccaucaACGUCGCCc -3'
miRNA:   3'- -UACUGCC-CG---------UCCCGCgGG-------UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 59801 0.67 0.26458
Target:  5'- uUGGCaGGCcgcacucccagcagGGGGCGUggCgGCGCUGCCa -3'
miRNA:   3'- uACUGcCCG--------------UCCCGCG--GgUGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 3397 0.67 0.260244
Target:  5'- -aGAaguuGGCcGcGGCGCCCGCGCgaGCCa -3'
miRNA:   3'- uaCUgc--CCGuC-CCGCGGGUGCGg-CGG- -5'
18283 3' -65.2 NC_004681.1 + 5702 0.67 0.25415
Target:  5'- cUGACGGGCuGGaGCGCggCC-UGUCGCUc -3'
miRNA:   3'- uACUGCCCGuCC-CGCG--GGuGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 55284 0.67 0.25415
Target:  5'- -aGAUGGGCAuuccgucgcGGGCGaUCCAUGgcuUCGCCg -3'
miRNA:   3'- uaCUGCCCGU---------CCCGC-GGGUGC---GGCGG- -5'
18283 3' -65.2 NC_004681.1 + 7260 0.68 0.248173
Target:  5'- -cGACGcGGCcguccaccucGGCGCCgaguGCGCCGCCu -3'
miRNA:   3'- uaCUGC-CCGuc--------CCGCGGg---UGCGGCGG- -5'
18283 3' -65.2 NC_004681.1 + 62518 0.68 0.248173
Target:  5'- -cGGagaGGGCGGugucGGCGCCCA-GCCauGCCa -3'
miRNA:   3'- uaCUg--CCCGUC----CCGCGGGUgCGG--CGG- -5'
18283 3' -65.2 NC_004681.1 + 16243 0.68 0.236569
Target:  5'- -cGACGGGau-GGcCGCCaGCGCCGCg -3'
miRNA:   3'- uaCUGCCCgucCC-GCGGgUGCGGCGg -5'
18283 3' -65.2 NC_004681.1 + 39840 0.68 0.236569
Target:  5'- --cGCGcGCAccGCGCCCGCGCgCGCCa -3'
miRNA:   3'- uacUGCcCGUccCGCGGGUGCG-GCGG- -5'
18283 3' -65.2 NC_004681.1 + 6457 0.68 0.230939
Target:  5'- ---uCGGGCGuGGCGCCCAaggGCUGCa -3'
miRNA:   3'- uacuGCCCGUcCCGCGGGUg--CGGCGg -5'
18283 3' -65.2 NC_004681.1 + 16132 0.68 0.225423
Target:  5'- gGUGACa-GCGGcGGCGCCCuuGCCagcaGCCg -3'
miRNA:   3'- -UACUGccCGUC-CCGCGGGugCGG----CGG- -5'
18283 3' -65.2 NC_004681.1 + 50558 0.68 0.220019
Target:  5'- -cGGuCGGGguGGGCgucGCCCACGaCGUg -3'
miRNA:   3'- uaCU-GCCCguCCCG---CGGGUGCgGCGg -5'
18283 3' -65.2 NC_004681.1 + 25238 0.69 0.209543
Target:  5'- -cGGCGGcCAuGGCGCCCGCGgCGgCg -3'
miRNA:   3'- uaCUGCCcGUcCCGCGGGUGCgGCgG- -5'
18283 3' -65.2 NC_004681.1 + 14484 0.69 0.209543
Target:  5'- -cGcCGaGCAGGGCGCgCugGUgGCCg -3'
miRNA:   3'- uaCuGCcCGUCCCGCGgGugCGgCGG- -5'
18283 3' -65.2 NC_004681.1 + 51581 0.69 0.202966
Target:  5'- cUGGC-GGCAGcGGuCGCCCaguucgaugaggcgACGCUGCCu -3'
miRNA:   3'- uACUGcCCGUC-CC-GCGGG--------------UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.