miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18284 3' -58 NC_004681.1 + 7724 0.66 0.740993
Target:  5'- -aGUCCACcaUCGAgGU---GGAGGUCCc -3'
miRNA:   3'- cgCAGGUG--AGCUgCAgccCCUCCAGG- -5'
18284 3' -58 NC_004681.1 + 452 0.66 0.731113
Target:  5'- gGCGUCCAaccuggcCGAguuCGU-GGGGAGGcgCCu -3'
miRNA:   3'- -CGCAGGUga-----GCU---GCAgCCCCUCCa-GG- -5'
18284 3' -58 NC_004681.1 + 6880 0.66 0.731113
Target:  5'- -aGUcCCGCUCGACGUCGaccacGGcauGUCCg -3'
miRNA:   3'- cgCA-GGUGAGCUGCAGCc----CCuc-CAGG- -5'
18284 3' -58 NC_004681.1 + 18809 0.66 0.721145
Target:  5'- gGCGauguucugCUGCUCGAUGUUGacgaGAGGUCCa -3'
miRNA:   3'- -CGCa-------GGUGAGCUGCAGCcc--CUCCAGG- -5'
18284 3' -58 NC_004681.1 + 46740 0.66 0.720143
Target:  5'- cGCGaCCACgccucaaagacagUgGGCGUgugCGGGGcgGGGUCCu -3'
miRNA:   3'- -CGCaGGUG-------------AgCUGCA---GCCCC--UCCAGG- -5'
18284 3' -58 NC_004681.1 + 52635 0.66 0.69997
Target:  5'- aGCGUCgAaggcugcCUCGGCcaaGUCGGuGAGGUCg -3'
miRNA:   3'- -CGCAGgU-------GAGCUG---CAGCCcCUCCAGg -5'
18284 3' -58 NC_004681.1 + 27049 0.67 0.674434
Target:  5'- -aGUCCGuggUCGGCGUCGaGGGAccuacaaccaacuccGGUCUu -3'
miRNA:   3'- cgCAGGUg--AGCUGCAGC-CCCU---------------CCAGG- -5'
18284 3' -58 NC_004681.1 + 7913 0.67 0.629039
Target:  5'- gGCGUUC---CGGCcucaUCGGGGAGGUCg -3'
miRNA:   3'- -CGCAGGugaGCUGc---AGCCCCUCCAGg -5'
18284 3' -58 NC_004681.1 + 32785 0.67 0.629039
Target:  5'- -aG-CCGCgCGACGUCGGcGGGGUaCCc -3'
miRNA:   3'- cgCaGGUGaGCUGCAGCCcCUCCA-GG- -5'
18284 3' -58 NC_004681.1 + 26763 0.68 0.618702
Target:  5'- cGUGUCCACUCccauuaccgGGC-UCGGcGGuGGUUCu -3'
miRNA:   3'- -CGCAGGUGAG---------CUGcAGCC-CCuCCAGG- -5'
18284 3' -58 NC_004681.1 + 27097 0.68 0.587787
Target:  5'- cCGUCCACUCGcACc-CGGuGGAGGcaagcucaUCCg -3'
miRNA:   3'- cGCAGGUGAGC-UGcaGCC-CCUCC--------AGG- -5'
18284 3' -58 NC_004681.1 + 52069 0.68 0.577538
Target:  5'- gGCGUCg--UCGugGauuUCcagGGGGAGGUCCu -3'
miRNA:   3'- -CGCAGgugAGCugC---AG---CCCCUCCAGG- -5'
18284 3' -58 NC_004681.1 + 50985 0.75 0.268311
Target:  5'- aGCGUCaauggaaCACcggcgUCGACGUCGGGGAGcucuUCCa -3'
miRNA:   3'- -CGCAG-------GUG-----AGCUGCAGCCCCUCc---AGG- -5'
18284 3' -58 NC_004681.1 + 10288 0.77 0.200362
Target:  5'- gGUGcUCCACUCGGaGcCGGGGAGG-CCg -3'
miRNA:   3'- -CGC-AGGUGAGCUgCaGCCCCUCCaGG- -5'
18284 3' -58 NC_004681.1 + 22476 1.13 0.000578
Target:  5'- aGCGUCCACUCGACGUCGGGGAGGUCCu -3'
miRNA:   3'- -CGCAGGUGAGCUGCAGCCCCUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.