miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18284 5' -54.2 NC_004681.1 + 3049 0.66 0.879582
Target:  5'- cGGGGuccUCGCUGGugaaCUCGGCGCg-- -3'
miRNA:   3'- -CCCCuaaAGUGGCUg---GAGCUGCGaca -5'
18284 5' -54.2 NC_004681.1 + 62304 0.66 0.879582
Target:  5'- cGGGAUggaagcgCACCGACUg-GugGUUGg -3'
miRNA:   3'- cCCCUAaa-----GUGGCUGGagCugCGACa -5'
18284 5' -54.2 NC_004681.1 + 32977 0.66 0.864205
Target:  5'- cGGGA---CACC-ACCUCGGCGCc-- -3'
miRNA:   3'- cCCCUaaaGUGGcUGGAGCUGCGaca -5'
18284 5' -54.2 NC_004681.1 + 8556 0.67 0.812786
Target:  5'- cGGGGuca--GCCG-CCUUGGCGCUc- -3'
miRNA:   3'- -CCCCuaaagUGGCuGGAGCUGCGAca -5'
18284 5' -54.2 NC_004681.1 + 53703 0.67 0.797894
Target:  5'- uGGGuguccaugaccgUCGCCGACCUCGuCGCc-- -3'
miRNA:   3'- cCCCuaa---------AGUGGCUGGAGCuGCGaca -5'
18284 5' -54.2 NC_004681.1 + 38046 0.68 0.774777
Target:  5'- aGGGc---CAuCCGGCCUCGGgGCUGa -3'
miRNA:   3'- cCCCuaaaGU-GGCUGGAGCUgCGACa -5'
18284 5' -54.2 NC_004681.1 + 5470 0.68 0.764897
Target:  5'- uGGGAgugggUCG-CCUCGACGCUGg -3'
miRNA:   3'- cCCCUaaaguGGCuGGAGCUGCGACa -5'
18284 5' -54.2 NC_004681.1 + 24982 0.68 0.744758
Target:  5'- cGGGG---UCGCCGcCCUCGccauUGCUGg -3'
miRNA:   3'- -CCCCuaaAGUGGCuGGAGCu---GCGACa -5'
18284 5' -54.2 NC_004681.1 + 30070 0.69 0.728329
Target:  5'- uGGGGGUUggGCCGACCU-GGCGggcaaggguuccaauCUGUa -3'
miRNA:   3'- -CCCCUAAagUGGCUGGAgCUGC---------------GACA- -5'
18284 5' -54.2 NC_004681.1 + 33982 0.69 0.724183
Target:  5'- -aGGuugUCACCGACCUCGgguACGCagGUg -3'
miRNA:   3'- ccCCuaaAGUGGCUGGAGC---UGCGa-CA- -5'
18284 5' -54.2 NC_004681.1 + 475 0.7 0.639228
Target:  5'- uGGGGAgg-CGCCuGGCCgaGAUGCUGg -3'
miRNA:   3'- -CCCCUaaaGUGG-CUGGagCUGCGACa -5'
18284 5' -54.2 NC_004681.1 + 43903 0.73 0.45255
Target:  5'- cGGGGGUgggCGCgGACCUCGugGaaGg -3'
miRNA:   3'- -CCCCUAaa-GUGgCUGGAGCugCgaCa -5'
18284 5' -54.2 NC_004681.1 + 22442 1.09 0.002201
Target:  5'- gGGGGAUUUCACCGACCUCGACGCUGUc -3'
miRNA:   3'- -CCCCUAAAGUGGCUGGAGCUGCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.