miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 8283 0.68 0.647226
Target:  5'- aGCCucgguGGCGcGGacgCCGCCaaGGACGGCCu -3'
miRNA:   3'- gCGG-----UUGC-CCaa-GGUGGa-CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 64714 0.68 0.636638
Target:  5'- aCGCUggUGGGUccgcCCACCUGGAacuacccaGCCu -3'
miRNA:   3'- -GCGGuuGCCCAa---GGUGGACUUgc------CGG- -5'
18285 3' -56.4 NC_004681.1 + 4423 0.68 0.636638
Target:  5'- aGCCAAacUGGa--CCGCCUGAacgACGGUCg -3'
miRNA:   3'- gCGGUU--GCCcaaGGUGGACU---UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 53030 0.68 0.626045
Target:  5'- uGUCGAUGGGUaggcacUCCGCCgagGuccucguGCGGCUc -3'
miRNA:   3'- gCGGUUGCCCA------AGGUGGa--Cu------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 61798 0.69 0.583811
Target:  5'- aGCUucaGGCGGGuUUCCAUCUuGGagaccucggcgGCGGCCu -3'
miRNA:   3'- gCGG---UUGCCC-AAGGUGGA-CU-----------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 4237 0.68 0.626045
Target:  5'- aGCgAugGGGUUgUugcggGCCUcAGCGGCCu -3'
miRNA:   3'- gCGgUugCCCAAgG-----UGGAcUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 29386 0.68 0.636638
Target:  5'- aGUUGACGGGagUCCAUg-GAccaGCGGCCa -3'
miRNA:   3'- gCGGUUGCCCa-AGGUGgaCU---UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 45674 0.68 0.647226
Target:  5'- gGCCAccuuGCGGGcgaugUCCACCUGcuccAgGaGCCg -3'
miRNA:   3'- gCGGU----UGCCCa----AGGUGGACu---UgC-CGG- -5'
18285 3' -56.4 NC_004681.1 + 21669 0.68 0.668355
Target:  5'- aGCCAAUGGGUgauggCCAUUuaggUGGAauucggugaGGCCa -3'
miRNA:   3'- gCGGUUGCCCAa----GGUGG----ACUUg--------CCGG- -5'
18285 3' -56.4 NC_004681.1 + 16184 0.68 0.668355
Target:  5'- gCGCC-GCGGuGgugacgCCACCgaGGGCGGCa -3'
miRNA:   3'- -GCGGuUGCC-Caa----GGUGGa-CUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 46471 0.68 0.668355
Target:  5'- uGUCAucgauGCGGGUccggUCCACCUccaGAcuGgGGCCg -3'
miRNA:   3'- gCGGU-----UGCCCA----AGGUGGA---CU--UgCCGG- -5'
18285 3' -56.4 NC_004681.1 + 18064 0.7 0.501553
Target:  5'- gGCCGcaugggcuGCGGGgcCCACCgGAGCcGCCc -3'
miRNA:   3'- gCGGU--------UGCCCaaGGUGGaCUUGcCGG- -5'
18285 3' -56.4 NC_004681.1 + 7832 0.71 0.491605
Target:  5'- uCGCCcuCGGGgaccUCCACCUcGAUGGUg -3'
miRNA:   3'- -GCGGuuGCCCa---AGGUGGAcUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 59098 0.71 0.462332
Target:  5'- gCGCCcucccccACGaGGUcuUCgagCACCUGGGCGGCCu -3'
miRNA:   3'- -GCGGu------UGC-CCA--AG---GUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 12987 0.71 0.443334
Target:  5'- aGCCGGugUGGGUguggUCACCcGcAGCGGCCg -3'
miRNA:   3'- gCGGUU--GCCCAa---GGUGGaC-UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 33429 0.73 0.363686
Target:  5'- uGCgGGCGGGUg-C-CCUGGACGGCg -3'
miRNA:   3'- gCGgUUGCCCAagGuGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 62541 0.74 0.33161
Target:  5'- gGCCAuuCGGGUUU--CCUGGGCGGCg -3'
miRNA:   3'- gCGGUu-GCCCAAGguGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 14895 0.75 0.267221
Target:  5'- gGCCAGCuGGGcgCCAgCCUucaGGAUGGCCa -3'
miRNA:   3'- gCGGUUG-CCCaaGGU-GGA---CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 51675 0.78 0.197037
Target:  5'- uGCCggUGGGUugcUCCACCUcggagagGAACuGGCCa -3'
miRNA:   3'- gCGGuuGCCCA---AGGUGGA-------CUUG-CCGG- -5'
18285 3' -56.4 NC_004681.1 + 18708 0.65 0.786858
Target:  5'- uGCCAGCGGuGUUCUcccccgcggGCUUGAuguugccgauacccAUGGCg -3'
miRNA:   3'- gCGGUUGCC-CAAGG---------UGGACU--------------UGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.