Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18285 | 3' | -56.4 | NC_004681.1 | + | 16030 | 0.67 | 0.710157 |
Target: 5'- gCGCCAGCGa---UgGCCUGGAUGGUCu -3' miRNA: 3'- -GCGGUUGCccaaGgUGGACUUGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 62541 | 0.74 | 0.33161 |
Target: 5'- gGCCAuuCGGGUUU--CCUGGGCGGCg -3' miRNA: 3'- gCGGUu-GCCCAAGguGGACUUGCCGg -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 8331 | 0.66 | 0.770524 |
Target: 5'- gCGCCu-CGaccUCgGCCUGGugGGCCu -3' miRNA: 3'- -GCGGuuGCccaAGgUGGACUugCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 9956 | 0.67 | 0.730672 |
Target: 5'- aCGCCuGCGGuGggCCgguucgucuucGCCUu-GCGGCCg -3' miRNA: 3'- -GCGGuUGCC-CaaGG-----------UGGAcuUGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 6407 | 0.67 | 0.689358 |
Target: 5'- gGCCuuCGGGUcaUCCgACCgcggcaggcccaUGAucucGCGGCCc -3' miRNA: 3'- gCGGuuGCCCA--AGG-UGG------------ACU----UGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 14895 | 0.75 | 0.267221 |
Target: 5'- gGCCAGCuGGGcgCCAgCCUucaGGAUGGCCa -3' miRNA: 3'- gCGGUUG-CCCaaGGU-GGA---CUUGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 18485 | 0.67 | 0.730672 |
Target: 5'- uGCCGccGCGGccgCCGCCUGGcCuGCCa -3' miRNA: 3'- gCGGU--UGCCcaaGGUGGACUuGcCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 51675 | 0.78 | 0.197037 |
Target: 5'- uGCCggUGGGUugcUCCACCUcggagagGAACuGGCCa -3' miRNA: 3'- gCGGuuGCCCA---AGGUGGA-------CUUG-CCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 23019 | 1.12 | 0.000779 |
Target: 5'- uCGCCAACGGGUUCCACCUGAACGGCCa -3' miRNA: 3'- -GCGGUUGCCCAAGGUGGACUUGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 4237 | 0.68 | 0.626045 |
Target: 5'- aGCgAugGGGUUgUugcggGCCUcAGCGGCCu -3' miRNA: 3'- gCGgUugCCCAAgG-----UGGAcUUGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 49435 | 0.67 | 0.699787 |
Target: 5'- gCGCCcGCGGcg-CCGCCguggcGGACGGUg -3' miRNA: 3'- -GCGGuUGCCcaaGGUGGa----CUUGCCGg -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 9191 | 0.67 | 0.730672 |
Target: 5'- aGCCAGCGG----CGCCggUGAcgacGCGGCCa -3' miRNA: 3'- gCGGUUGCCcaagGUGG--ACU----UGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 16184 | 0.68 | 0.668355 |
Target: 5'- gCGCC-GCGGuGgugacgCCACCgaGGGCGGCa -3' miRNA: 3'- -GCGGuUGCC-Caa----GGUGGa-CUUGCCGg -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 29386 | 0.68 | 0.636638 |
Target: 5'- aGUUGACGGGagUCCAUg-GAccaGCGGCCa -3' miRNA: 3'- gCGGUUGCCCa-AGGUGgaCU---UGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 7832 | 0.71 | 0.491605 |
Target: 5'- uCGCCcuCGGGgaccUCCACCUcGAUGGUg -3' miRNA: 3'- -GCGGuuGCCCa---AGGUGGAcUUGCCGg -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 33429 | 0.73 | 0.363686 |
Target: 5'- uGCgGGCGGGUg-C-CCUGGACGGCg -3' miRNA: 3'- gCGgUUGCCCAagGuGGACUUGCCGg -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 12382 | 0.66 | 0.78114 |
Target: 5'- uGCCGA-GGGUUgCCACaggggcgaccucggGAGuCGGCCa -3' miRNA: 3'- gCGGUUgCCCAA-GGUGga------------CUU-GCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 32776 | 0.66 | 0.780182 |
Target: 5'- aCGUCGGCGGGguacccggaCCACaUGu-CGGCCc -3' miRNA: 3'- -GCGGUUGCCCaa-------GGUGgACuuGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 41665 | 0.66 | 0.750821 |
Target: 5'- uGCCuGCGGGguggCGCUgcauGGCGGCCg -3' miRNA: 3'- gCGGuUGCCCaag-GUGGac--UUGCCGG- -5' |
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18285 | 3' | -56.4 | NC_004681.1 | + | 14533 | 0.67 | 0.730672 |
Target: 5'- cCGCCucGCGGGcggcguagauUUUCGCCU---CGGCCg -3' miRNA: 3'- -GCGGu-UGCCC----------AAGGUGGAcuuGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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