miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 16030 0.67 0.710157
Target:  5'- gCGCCAGCGa---UgGCCUGGAUGGUCu -3'
miRNA:   3'- -GCGGUUGCccaaGgUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 62541 0.74 0.33161
Target:  5'- gGCCAuuCGGGUUU--CCUGGGCGGCg -3'
miRNA:   3'- gCGGUu-GCCCAAGguGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 8331 0.66 0.770524
Target:  5'- gCGCCu-CGaccUCgGCCUGGugGGCCu -3'
miRNA:   3'- -GCGGuuGCccaAGgUGGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 9956 0.67 0.730672
Target:  5'- aCGCCuGCGGuGggCCgguucgucuucGCCUu-GCGGCCg -3'
miRNA:   3'- -GCGGuUGCC-CaaGG-----------UGGAcuUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 6407 0.67 0.689358
Target:  5'- gGCCuuCGGGUcaUCCgACCgcggcaggcccaUGAucucGCGGCCc -3'
miRNA:   3'- gCGGuuGCCCA--AGG-UGG------------ACU----UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 14895 0.75 0.267221
Target:  5'- gGCCAGCuGGGcgCCAgCCUucaGGAUGGCCa -3'
miRNA:   3'- gCGGUUG-CCCaaGGU-GGA---CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 18485 0.67 0.730672
Target:  5'- uGCCGccGCGGccgCCGCCUGGcCuGCCa -3'
miRNA:   3'- gCGGU--UGCCcaaGGUGGACUuGcCGG- -5'
18285 3' -56.4 NC_004681.1 + 51675 0.78 0.197037
Target:  5'- uGCCggUGGGUugcUCCACCUcggagagGAACuGGCCa -3'
miRNA:   3'- gCGGuuGCCCA---AGGUGGA-------CUUG-CCGG- -5'
18285 3' -56.4 NC_004681.1 + 23019 1.12 0.000779
Target:  5'- uCGCCAACGGGUUCCACCUGAACGGCCa -3'
miRNA:   3'- -GCGGUUGCCCAAGGUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 4237 0.68 0.626045
Target:  5'- aGCgAugGGGUUgUugcggGCCUcAGCGGCCu -3'
miRNA:   3'- gCGgUugCCCAAgG-----UGGAcUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 49435 0.67 0.699787
Target:  5'- gCGCCcGCGGcg-CCGCCguggcGGACGGUg -3'
miRNA:   3'- -GCGGuUGCCcaaGGUGGa----CUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 9191 0.67 0.730672
Target:  5'- aGCCAGCGG----CGCCggUGAcgacGCGGCCa -3'
miRNA:   3'- gCGGUUGCCcaagGUGG--ACU----UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 16184 0.68 0.668355
Target:  5'- gCGCC-GCGGuGgugacgCCACCgaGGGCGGCa -3'
miRNA:   3'- -GCGGuUGCC-Caa----GGUGGa-CUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 29386 0.68 0.636638
Target:  5'- aGUUGACGGGagUCCAUg-GAccaGCGGCCa -3'
miRNA:   3'- gCGGUUGCCCa-AGGUGgaCU---UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 7832 0.71 0.491605
Target:  5'- uCGCCcuCGGGgaccUCCACCUcGAUGGUg -3'
miRNA:   3'- -GCGGuuGCCCa---AGGUGGAcUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 33429 0.73 0.363686
Target:  5'- uGCgGGCGGGUg-C-CCUGGACGGCg -3'
miRNA:   3'- gCGgUUGCCCAagGuGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 12382 0.66 0.78114
Target:  5'- uGCCGA-GGGUUgCCACaggggcgaccucggGAGuCGGCCa -3'
miRNA:   3'- gCGGUUgCCCAA-GGUGga------------CUU-GCCGG- -5'
18285 3' -56.4 NC_004681.1 + 32776 0.66 0.780182
Target:  5'- aCGUCGGCGGGguacccggaCCACaUGu-CGGCCc -3'
miRNA:   3'- -GCGGUUGCCCaa-------GGUGgACuuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 41665 0.66 0.750821
Target:  5'- uGCCuGCGGGguggCGCUgcauGGCGGCCg -3'
miRNA:   3'- gCGGuUGCCCaag-GUGGac--UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 14533 0.67 0.730672
Target:  5'- cCGCCucGCGGGcggcguagauUUUCGCCU---CGGCCg -3'
miRNA:   3'- -GCGGu-UGCCC----------AAGGUGGAcuuGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.