miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 44063 0.66 0.740797
Target:  5'- gGCCAugGGGUaCCuACUcGGcaGGCCa -3'
miRNA:   3'- gCGGUugCCCAaGG-UGGaCUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 14533 0.67 0.730672
Target:  5'- cCGCCucGCGGGcggcguagauUUUCGCCU---CGGCCg -3'
miRNA:   3'- -GCGGu-UGCCC----------AAGGUGGAcuuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 9956 0.67 0.730672
Target:  5'- aCGCCuGCGGuGggCCgguucgucuucGCCUu-GCGGCCg -3'
miRNA:   3'- -GCGGuUGCC-CaaGG-----------UGGAcuUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 20660 0.67 0.730672
Target:  5'- cCGCCAGCGccg-CCAUUUGuGCGGCg -3'
miRNA:   3'- -GCGGUUGCccaaGGUGGACuUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 9191 0.67 0.730672
Target:  5'- aGCCAGCGG----CGCCggUGAcgacGCGGCCa -3'
miRNA:   3'- gCGGUUGCCcaagGUGG--ACU----UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 18485 0.67 0.730672
Target:  5'- uGCCGccGCGGccgCCGCCUGGcCuGCCa -3'
miRNA:   3'- gCGGU--UGCCcaaGGUGGACUuGcCGG- -5'
18285 3' -56.4 NC_004681.1 + 2239 0.67 0.730672
Target:  5'- aCGCCGcgcaaccugcCGGGUUaCCACaucagcggGggUGGCCa -3'
miRNA:   3'- -GCGGUu---------GCCCAA-GGUGga------CuuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 352 0.67 0.730672
Target:  5'- cCGUCAugGGcGccaUCCGCgaGGACGaGCCc -3'
miRNA:   3'- -GCGGUugCC-Ca--AGGUGgaCUUGC-CGG- -5'
18285 3' -56.4 NC_004681.1 + 18505 0.67 0.729654
Target:  5'- gCGCCGA-GGGUcucauggagaccuUCCugCUGAACGaCUc -3'
miRNA:   3'- -GCGGUUgCCCA-------------AGGugGACUUGCcGG- -5'
18285 3' -56.4 NC_004681.1 + 41755 0.67 0.724552
Target:  5'- cCG-CGACGGGaaCCuCCUGcacgccuccagguucGACGGCCu -3'
miRNA:   3'- -GCgGUUGCCCaaGGuGGAC---------------UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 60136 0.67 0.720455
Target:  5'- uGCCAgguGCGGGagCCGCC-GAA-GGCg -3'
miRNA:   3'- gCGGU---UGCCCaaGGUGGaCUUgCCGg -5'
18285 3' -56.4 NC_004681.1 + 8512 0.67 0.720455
Target:  5'- uCGCgGACGGuGagaCCGCCcccGCGGCCa -3'
miRNA:   3'- -GCGgUUGCC-Caa-GGUGGacuUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 11813 0.67 0.719428
Target:  5'- uGCCGucagugggaucgaACGGGgugaagUCCGCCaggcUGGugGaGCCa -3'
miRNA:   3'- gCGGU-------------UGCCCa-----AGGUGG----ACUugC-CGG- -5'
18285 3' -56.4 NC_004681.1 + 12321 0.67 0.710157
Target:  5'- aGCCcagAACGGG--CCACCgggGAuGCGGCg -3'
miRNA:   3'- gCGG---UUGCCCaaGGUGGa--CU-UGCCGg -5'
18285 3' -56.4 NC_004681.1 + 16030 0.67 0.710157
Target:  5'- gCGCCAGCGa---UgGCCUGGAUGGUCu -3'
miRNA:   3'- -GCGGUUGCccaaGgUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 23637 0.67 0.710157
Target:  5'- uCGCCGAcgacggcgagcCGGGUgagcCCAUC-GAGCuGGCCu -3'
miRNA:   3'- -GCGGUU-----------GCCCAa---GGUGGaCUUG-CCGG- -5'
18285 3' -56.4 NC_004681.1 + 34587 0.67 0.709123
Target:  5'- gCGCCu-CGGuGUacgccuccUCCACCUcGAuggggauGCGGCCc -3'
miRNA:   3'- -GCGGuuGCC-CA--------AGGUGGA-CU-------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 12754 0.67 0.708088
Target:  5'- cCGCCAGCGaGaucagcgaugCCACCUcGGugGGUCg -3'
miRNA:   3'- -GCGGUUGC-Ccaa-------GGUGGA-CUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 49435 0.67 0.699787
Target:  5'- gCGCCcGCGGcg-CCGCCguggcGGACGGUg -3'
miRNA:   3'- -GCGGuUGCCcaaGGUGGa----CUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 48792 0.67 0.699787
Target:  5'- gGCCGucgagggcGCGGGUgaCAUCUGAugGuuGCCg -3'
miRNA:   3'- gCGGU--------UGCCCAagGUGGACUugC--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.