miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 2022 0.67 0.614818
Target:  5'- gCgGCCagGugGUCGugGAGGgCGGCCGCa -3'
miRNA:   3'- -GgCGG--CugCGGCuaCUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 68758 0.67 0.604562
Target:  5'- aCGCC-AgGCCGAaggaguuagaUGAcGGUCGACCa- -3'
miRNA:   3'- gGCGGcUgCGGCU----------ACU-CCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 12144 0.67 0.614818
Target:  5'- gCCGUCaACGCCGAUGAcaacgaucuggcGGUaGACCa- -3'
miRNA:   3'- -GGCGGcUGCGGCUACU------------CCAgCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 68280 0.67 0.635363
Target:  5'- -gGCCuuGACGUCGAUGGGGaaGAguUCGCu -3'
miRNA:   3'- ggCGG--CUGCGGCUACUCCagCU--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 56414 0.67 0.645636
Target:  5'- aCGCCuuGGCGCCG-UGGGuGUgcuUGACCGg -3'
miRNA:   3'- gGCGG--CUGCGGCuACUC-CA---GCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 56814 0.67 0.644609
Target:  5'- -gGCUGACcaucggguguccaGCCGAUGAGcUCG-CCGUa -3'
miRNA:   3'- ggCGGCUG-------------CGGCUACUCcAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 508 0.67 0.635363
Target:  5'- uCCaCCGGCcaagagacgguGCCGGUGcccuugccccAGGUCuuGACCGCg -3'
miRNA:   3'- -GGcGGCUG-----------CGGCUAC----------UCCAG--CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 51133 0.67 0.635363
Target:  5'- cUCGCCGuCGCCGA--GGG-CGAUgaCGCc -3'
miRNA:   3'- -GGCGGCuGCGGCUacUCCaGCUG--GCG- -5'
18286 3' -58.8 NC_004681.1 + 632 0.67 0.625088
Target:  5'- gUGCC--CGUCGuUGAGGgacucgCGGCCGCg -3'
miRNA:   3'- gGCGGcuGCGGCuACUCCa-----GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28228 0.67 0.614818
Target:  5'- uCCGCCGcCGCCGuugcccgcGGGGcCG-UCGCu -3'
miRNA:   3'- -GGCGGCuGCGGCua------CUCCaGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 46818 0.67 0.614818
Target:  5'- gCGUCGAUGCCGcgGAaGUUGaaguGCUGCu -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCAGC----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3376 0.67 0.594326
Target:  5'- uCCGCCuGCaGCgGAagucUGAGaaGUUGGCCGCg -3'
miRNA:   3'- -GGCGGcUG-CGgCU----ACUC--CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33051 0.67 0.645636
Target:  5'- uUGCCGAagcacccgcCGCCGAUGAaGUCcuucagcgauGCCGCa -3'
miRNA:   3'- gGCGGCU---------GCGGCUACUcCAGc---------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 16716 0.67 0.625088
Target:  5'- cCCGCCGccuccaucGCgGCCugcaguUGcAGGUCGACCGg -3'
miRNA:   3'- -GGCGGC--------UG-CGGcu----AC-UCCAGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 7915 0.67 0.594326
Target:  5'- gCCGCCGAggaGCCGGaagaagUGGuGGUCGAagaGCc -3'
miRNA:   3'- -GGCGGCUg--CGGCU------ACU-CCAGCUgg-CG- -5'
18286 3' -58.8 NC_004681.1 + 12998 0.67 0.594326
Target:  5'- aCCGCUGGCaCCGcgGAcGacgUGGCCGCg -3'
miRNA:   3'- -GGCGGCUGcGGCuaCUcCa--GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28044 0.67 0.604562
Target:  5'- gCGCUGGCGCUGGcggucGAGGcggUGGCgGCa -3'
miRNA:   3'- gGCGGCUGCGGCUa----CUCCa--GCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 56007 0.67 0.604562
Target:  5'- -aGCgCGACGCCaagGAGGgCGAccuCCGCa -3'
miRNA:   3'- ggCG-GCUGCGGcuaCUCCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 52377 0.68 0.573944
Target:  5'- cCCGCggcgCGAUGUCGA--GGGUCGgaugaguaACCGCg -3'
miRNA:   3'- -GGCG----GCUGCGGCUacUCCAGC--------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 47106 0.68 0.573944
Target:  5'- gCCGCCGcCGCUGAgcgacGAGaacgccGagGGCCGCg -3'
miRNA:   3'- -GGCGGCuGCGGCUa----CUC------CagCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.