miRNA display CGI


Results 81 - 100 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 25319 0.69 0.513994
Target:  5'- gCCGCCGuuGuuGAaGAagcGGUCG-CCGCc -3'
miRNA:   3'- -GGCGGCugCggCUaCU---CCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3745 0.69 0.513994
Target:  5'- gCGgCGACGUCGAaggcGAGGgCGGCCuGCu -3'
miRNA:   3'- gGCgGCUGCGGCUa---CUCCaGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 73231 0.69 0.519884
Target:  5'- aCGCUGAgGCUGAggcugucgaggcgGAGGcagaGACCGCu -3'
miRNA:   3'- gGCGGCUgCGGCUa------------CUCCag--CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25154 0.69 0.523826
Target:  5'- gCCGCCcGCGCCGcccucUGcGGUC-ACCGUg -3'
miRNA:   3'- -GGCGGcUGCGGCu----ACuCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 27146 0.69 0.523826
Target:  5'- uCCcUCGACGCCGAccacgGAcucgaaGG-CGACCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa----CU------CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 35553 0.69 0.484972
Target:  5'- gCGCaCGugGCUuAUGAGGUUGAUaaaGCc -3'
miRNA:   3'- gGCG-GCugCGGcUACUCCAGCUGg--CG- -5'
18286 3' -58.8 NC_004681.1 + 41153 0.69 0.475472
Target:  5'- gCGgCGGCGCCGAaGAGGgcCG-UCGCa -3'
miRNA:   3'- gGCgGCUGCGGCUaCUCCa-GCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 5552 0.69 0.475473
Target:  5'- -aGCUGAUGCCGAUGcacccgucacGGGUCG-CCa- -3'
miRNA:   3'- ggCGGCUGCGGCUAC----------UCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 22380 0.69 0.475473
Target:  5'- uCC-CCGACGUCGAgugGAcgcuGGUCaccccGGCCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa--CU----CCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28355 0.69 0.475473
Target:  5'- aCC-CCGGCGCCGAUGcacuUCGACCu- -3'
miRNA:   3'- -GGcGGCUGCGGCUACucc-AGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 12262 0.69 0.484973
Target:  5'- gUGCUGugGCCGAcucccGAGGUCGcCCc- -3'
miRNA:   3'- gGCGGCugCGGCUa----CUCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 34345 0.69 0.484973
Target:  5'- aCGCCG-CGgCGGcgUGAgGGUUGugCGCg -3'
miRNA:   3'- gGCGGCuGCgGCU--ACU-CCAGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 39193 0.69 0.504238
Target:  5'- cUCGCCcucGACGUCGAgGAcgucagccuGGUCGACUGUc -3'
miRNA:   3'- -GGCGG---CUGCGGCUaCU---------CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 68889 0.69 0.50521
Target:  5'- gCgGCCGACGCCaucGAGGcgcugaccaucgucaCGGCCGCc -3'
miRNA:   3'- -GgCGGCUGCGGcuaCUCCa--------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 5662 0.69 0.523827
Target:  5'- uUCGCCGACGac---GAGGUCGugccgauCCGCu -3'
miRNA:   3'- -GGCGGCUGCggcuaCUCCAGCu------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 18396 0.69 0.523826
Target:  5'- gCUGCUGAcCGCCaGUcGAGGacugCGGCCGUg -3'
miRNA:   3'- -GGCGGCU-GCGGcUA-CUCCa---GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 24842 0.7 0.420559
Target:  5'- gCGUCGGCGgCGcgGGcGG-CGGCCGCc -3'
miRNA:   3'- gGCGGCUGCgGCuaCU-CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 44260 0.7 0.453984
Target:  5'- gCGCCGuagcacucguauucGCgGCCGGUGAGGgccaGGcCCGCg -3'
miRNA:   3'- gGCGGC--------------UG-CGGCUACUCCag--CU-GGCG- -5'
18286 3' -58.8 NC_004681.1 + 42551 0.7 0.466066
Target:  5'- gCGCCGACGUgguaGAUGAaguacgGGUCGugcagGCUGCg -3'
miRNA:   3'- gGCGGCUGCGg---CUACU------CCAGC-----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45117 0.7 0.447549
Target:  5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3'
miRNA:   3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.