miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 13706 0.71 0.369656
Target:  5'- aCGCC---GCCGAgauUGAGGUCGACCu- -3'
miRNA:   3'- gGCGGcugCGGCU---ACUCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 61157 0.71 0.377842
Target:  5'- gCCGCCgcGACGCCcaGGgcaacuGGGUCGACgGCg -3'
miRNA:   3'- -GGCGG--CUGCGG--CUac----UCCAGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 17944 0.71 0.391191
Target:  5'- aCGCCGggGCGCCcggguuGGUGAGGccggugccuugcgCGGCCGCc -3'
miRNA:   3'- gGCGGC--UGCGG------CUACUCCa------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 52625 0.71 0.369655
Target:  5'- gCUGCCucGGCcaaGUCGGUGAGGUCGAacUCGCc -3'
miRNA:   3'- -GGCGG--CUG---CGGCUACUCCAGCU--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 27491 0.71 0.41528
Target:  5'- aCCGCUGAcccugaccuggggcaCGCCucaGAUcGAGGUCGcACCGUc -3'
miRNA:   3'- -GGCGGCU---------------GCGG---CUA-CUCCAGC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 62694 0.71 0.403122
Target:  5'- gUCGUCGGCGCCgGAUGAGG-CGGaCGg -3'
miRNA:   3'- -GGCGGCUGCGG-CUACUCCaGCUgGCg -5'
18286 3' -58.8 NC_004681.1 + 28682 0.7 0.447549
Target:  5'- cCCGCgGGCGCUGAcgUGuucgcgcuGGUCgcauggGACCGCu -3'
miRNA:   3'- -GGCGgCUGCGGCU--ACu-------CCAG------CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 24842 0.7 0.420559
Target:  5'- gCGUCGGCGgCGcgGGcGG-CGGCCGCc -3'
miRNA:   3'- gGCGGCUGCgGCuaCU-CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 1045 0.7 0.438444
Target:  5'- gUCGCgGACGCCGA-GAGGauguaCGGCC-Cg -3'
miRNA:   3'- -GGCGgCUGCGGCUaCUCCa----GCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 45117 0.7 0.447549
Target:  5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3'
miRNA:   3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 51318 0.7 0.466066
Target:  5'- uCCGCCGAcgucaucaccguCGCCGcgGAGcUCGGCaaGCa -3'
miRNA:   3'- -GGCGGCU------------GCGGCuaCUCcAGCUGg-CG- -5'
18286 3' -58.8 NC_004681.1 + 32784 0.7 0.429447
Target:  5'- gCCGCgCGACGUCGgcGGGGUacccgGACCa- -3'
miRNA:   3'- -GGCG-GCUGCGGCuaCUCCAg----CUGGcg -5'
18286 3' -58.8 NC_004681.1 + 44260 0.7 0.453984
Target:  5'- gCGCCGuagcacucguauucGCgGCCGGUGAGGgccaGGcCCGCg -3'
miRNA:   3'- gGCGGC--------------UG-CGGCUACUCCag--CU-GGCG- -5'
18286 3' -58.8 NC_004681.1 + 63053 0.7 0.424101
Target:  5'- gCCGCCGcCGCCaccaccgccgaaggaGAUGGaGUCGACCa- -3'
miRNA:   3'- -GGCGGCuGCGG---------------CUACUcCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 39327 0.7 0.429447
Target:  5'- gCCG-CGGCGCaCGGUGAGcugacaGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCG-GCUACUC------CAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 40075 0.7 0.447549
Target:  5'- -gGCCGA-GCCGGUGA-GUUGACCcgGCg -3'
miRNA:   3'- ggCGGCUgCGGCUACUcCAGCUGG--CG- -5'
18286 3' -58.8 NC_004681.1 + 29249 0.7 0.420559
Target:  5'- gUCGUugaCGugGCCGuUGAGGUCGcCaCGCc -3'
miRNA:   3'- -GGCG---GCugCGGCuACUCCAGCuG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 45695 0.7 0.447549
Target:  5'- -gGCCGACGCgGAgGAGGcacCGGCCa- -3'
miRNA:   3'- ggCGGCUGCGgCUaCUCCa--GCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 42551 0.7 0.466066
Target:  5'- gCGCCGACGUgguaGAUGAaguacgGGUCGugcagGCUGCg -3'
miRNA:   3'- gGCGGCUGCGg---CUACU------CCAGC-----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 18193 0.7 0.420559
Target:  5'- gCGCCGAUGCCGggGAuGcCGAugcccauacCCGCg -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCaGCU---------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.