Results 81 - 100 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18286 | 3' | -58.8 | NC_004681.1 | + | 28228 | 0.67 | 0.614818 |
Target: 5'- uCCGCCGcCGCCGuugcccgcGGGGcCG-UCGCu -3' miRNA: 3'- -GGCGGCuGCGGCua------CUCCaGCuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 56007 | 0.67 | 0.604562 |
Target: 5'- -aGCgCGACGCCaagGAGGgCGAccuCCGCa -3' miRNA: 3'- ggCG-GCUGCGGcuaCUCCaGCU---GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28044 | 0.67 | 0.604562 |
Target: 5'- gCGCUGGCGCUGGcggucGAGGcggUGGCgGCa -3' miRNA: 3'- gGCGGCUGCGGCUa----CUCCa--GCUGgCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 12144 | 0.67 | 0.614818 |
Target: 5'- gCCGUCaACGCCGAUGAcaacgaucuggcGGUaGACCa- -3' miRNA: 3'- -GGCGGcUGCGGCUACU------------CCAgCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 46818 | 0.67 | 0.614818 |
Target: 5'- gCGUCGAUGCCGcgGAaGUUGaaguGCUGCu -3' miRNA: 3'- gGCGGCUGCGGCuaCUcCAGC----UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 22587 | 0.67 | 0.593303 |
Target: 5'- uCCGa-GGCGCCGAUGAuGGUgGcguugucGCCGUu -3' miRNA: 3'- -GGCggCUGCGGCUACU-CCAgC-------UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 45062 | 0.67 | 0.635364 |
Target: 5'- aCGCCGAagcaucCGCCGcggucGAGGcccUCG-CCGCg -3' miRNA: 3'- gGCGGCU------GCGGCua---CUCC---AGCuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 59098 | 0.67 | 0.625088 |
Target: 5'- cCCcCCaGACGCUGA--AGGUCuACCGCc -3' miRNA: 3'- -GGcGG-CUGCGGCUacUCCAGcUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 41069 | 0.67 | 0.625088 |
Target: 5'- gCGCCGcCGCCGAUGuGcUC-ACCGa -3' miRNA: 3'- gGCGGCuGCGGCUACuCcAGcUGGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 25197 | 0.67 | 0.614818 |
Target: 5'- cCUGgCGGCGCUGGcaacgGcGG-CGACCGCu -3' miRNA: 3'- -GGCgGCUGCGGCUa----CuCCaGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 2022 | 0.67 | 0.614818 |
Target: 5'- gCgGCCagGugGUCGugGAGGgCGGCCGCa -3' miRNA: 3'- -GgCGG--CugCGGCuaCUCCaGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 68758 | 0.67 | 0.604562 |
Target: 5'- aCGCC-AgGCCGAaggaguuagaUGAcGGUCGACCa- -3' miRNA: 3'- gGCGGcUgCGGCU----------ACU-CCAGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 38985 | 0.67 | 0.594326 |
Target: 5'- gCGCUggGugGCCGAcGAGGaaggcgucaacgUCGACgGCc -3' miRNA: 3'- gGCGG--CugCGGCUaCUCC------------AGCUGgCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 3376 | 0.67 | 0.594326 |
Target: 5'- uCCGCCuGCaGCgGAagucUGAGaaGUUGGCCGCg -3' miRNA: 3'- -GGCGGcUG-CGgCU----ACUC--CAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 12998 | 0.67 | 0.594326 |
Target: 5'- aCCGCUGGCaCCGcgGAcGacgUGGCCGCg -3' miRNA: 3'- -GGCGGCUGcGGCuaCUcCa--GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 7915 | 0.67 | 0.594326 |
Target: 5'- gCCGCCGAggaGCCGGaagaagUGGuGGUCGAagaGCc -3' miRNA: 3'- -GGCGGCUg--CGGCU------ACU-CCAGCUgg-CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 50832 | 0.67 | 0.614818 |
Target: 5'- aCCGCCacccagcuCGCCGAaGAGGUgaagCGccucGCCGCc -3' miRNA: 3'- -GGCGGcu------GCGGCUaCUCCA----GC----UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 23429 | 0.67 | 0.622006 |
Target: 5'- aCCGUCGACcucgGCCacucccgcaguucuGAUG-GGUCGggcGCCGCc -3' miRNA: 3'- -GGCGGCUG----CGG--------------CUACuCCAGC---UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 15912 | 0.67 | 0.625088 |
Target: 5'- aUCGCCGugGCCGc---GGUCaaGACCa- -3' miRNA: 3'- -GGCGGCugCGGCuacuCCAG--CUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 33345 | 0.67 | 0.614818 |
Target: 5'- cCCGCCcgcacaucACGCUGGcUGAGacCGGCCGCg -3' miRNA: 3'- -GGCGGc-------UGCGGCU-ACUCcaGCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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