miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 41153 0.69 0.475472
Target:  5'- gCGgCGGCGCCGAaGAGGgcCG-UCGCa -3'
miRNA:   3'- gGCgGCUGCGGCUaCUCCa-GCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 5552 0.69 0.475473
Target:  5'- -aGCUGAUGCCGAUGcacccgucacGGGUCG-CCa- -3'
miRNA:   3'- ggCGGCUGCGGCUAC----------UCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 28355 0.69 0.475473
Target:  5'- aCC-CCGGCGCCGAUGcacuUCGACCu- -3'
miRNA:   3'- -GGcGGCUGCGGCUACucc-AGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 22380 0.69 0.475473
Target:  5'- uCC-CCGACGUCGAgugGAcgcuGGUCaccccGGCCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa--CU----CCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 22472 0.69 0.484972
Target:  5'- uCCaCuCGACGUCGggGAGGUCcucGCCGUg -3'
miRNA:   3'- -GGcG-GCUGCGGCuaCUCCAGc--UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 35553 0.69 0.484972
Target:  5'- gCGCaCGugGCUuAUGAGGUUGAUaaaGCc -3'
miRNA:   3'- gGCG-GCugCGGcUACUCCAGCUGg--CG- -5'
18286 3' -58.8 NC_004681.1 + 34345 0.69 0.484973
Target:  5'- aCGCCG-CGgCGGcgUGAgGGUUGugCGCg -3'
miRNA:   3'- gGCGGCuGCgGCU--ACU-CCAGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 12262 0.69 0.484973
Target:  5'- gUGCUGugGCCGAcucccGAGGUCGcCCc- -3'
miRNA:   3'- gGCGGCugCGGCUa----CUCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 45617 0.69 0.494562
Target:  5'- gCCGCCGuCGUCGcccuuguaGUaGGGGUCG-CCGUc -3'
miRNA:   3'- -GGCGGCuGCGGC--------UA-CUCCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8644 0.69 0.494562
Target:  5'- cCCGUCGAa-CCGAaGGGGUucuggccgaUGGCCGCg -3'
miRNA:   3'- -GGCGGCUgcGGCUaCUCCA---------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 41677 0.69 0.494562
Target:  5'- aUCGCCGuGCGCUGccugcGGGGUggcgcugcauggCGGCCGCg -3'
miRNA:   3'- -GGCGGC-UGCGGCua---CUCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 51087 0.69 0.501326
Target:  5'- aCGUCGACGCCGGUGuuccauugacgcuuGGcGUCGG-CGUa -3'
miRNA:   3'- gGCGGCUGCGGCUAC--------------UC-CAGCUgGCG- -5'
18286 3' -58.8 NC_004681.1 + 39193 0.69 0.504238
Target:  5'- cUCGCCcucGACGUCGAgGAcgucagccuGGUCGACUGUc -3'
miRNA:   3'- -GGCGG---CUGCGGCUaCU---------CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 14630 0.69 0.504238
Target:  5'- aUGCCGACcCCGuUGAGGaUCGACUuCa -3'
miRNA:   3'- gGCGGCUGcGGCuACUCC-AGCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 19697 0.69 0.504238
Target:  5'- aCGCCGcagcGCGCCca-GAGcucGUUGACCGCg -3'
miRNA:   3'- gGCGGC----UGCGGcuaCUC---CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 22044 0.69 0.504238
Target:  5'- aCGCCGGcCGCCGAcgaaGAGGUCcuucCCGa -3'
miRNA:   3'- gGCGGCU-GCGGCUa---CUCCAGcu--GGCg -5'
18286 3' -58.8 NC_004681.1 + 68889 0.69 0.50521
Target:  5'- gCgGCCGACGCCaucGAGGcgcugaccaucgucaCGGCCGCc -3'
miRNA:   3'- -GgCGGCUGCGGcuaCUCCa--------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 17786 0.69 0.508131
Target:  5'- aCCGUCGAggcguagucgggagcUGCCGGUGAgagcgGGaUCGaACCGCc -3'
miRNA:   3'- -GGCGGCU---------------GCGGCUACU-----CC-AGC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25319 0.69 0.513994
Target:  5'- gCCGCCGuuGuuGAaGAagcGGUCG-CCGCc -3'
miRNA:   3'- -GGCGGCugCggCUaCU---CCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3745 0.69 0.513994
Target:  5'- gCGgCGACGUCGAaggcGAGGgCGGCCuGCu -3'
miRNA:   3'- gGCgGCUGCGGCUa---CUCCaGCUGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.