miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 73231 0.69 0.519884
Target:  5'- aCGCUGAgGCUGAggcugucgaggcgGAGGcagaGACCGCu -3'
miRNA:   3'- gGCGGCUgCGGCUa------------CUCCag--CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25154 0.69 0.523826
Target:  5'- gCCGCCcGCGCCGcccucUGcGGUC-ACCGUg -3'
miRNA:   3'- -GGCGGcUGCGGCu----ACuCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 27146 0.69 0.523826
Target:  5'- uCCcUCGACGCCGAccacgGAcucgaaGG-CGACCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa----CU------CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 18396 0.69 0.523826
Target:  5'- gCUGCUGAcCGCCaGUcGAGGacugCGGCCGUg -3'
miRNA:   3'- -GGCGGCU-GCGGcUA-CUCCa---GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 5662 0.69 0.523827
Target:  5'- uUCGCCGACGac---GAGGUCGugccgauCCGCu -3'
miRNA:   3'- -GGCGGCUGCggcuaCUCCAGCu------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 9017 0.68 0.543699
Target:  5'- gCCGuuGACGCCG---GGGUacccGCCGCc -3'
miRNA:   3'- -GGCggCUGCGGCuacUCCAgc--UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 37813 0.68 0.543699
Target:  5'- gCUGCCcuGAUgGUCGGUGAGGUUGAUCa- -3'
miRNA:   3'- -GGCGG--CUG-CGGCUACUCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 61084 0.68 0.557756
Target:  5'- aCCGCCGACcCCGAgcUGcGGUUcacccaaggugggcaGGCCGUc -3'
miRNA:   3'- -GGCGGCUGcGGCU--ACuCCAG---------------CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 44780 0.68 0.561791
Target:  5'- gCCGCCGuCGCCGuugccgucgagGAGGguguccUUGGCCuGCa -3'
miRNA:   3'- -GGCGGCuGCGGCua---------CUCC------AGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 40442 0.68 0.563812
Target:  5'- aCC-UCGGCGCCcuUGAGG-CGGCCGa -3'
miRNA:   3'- -GGcGGCUGCGGcuACUCCaGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 13833 0.68 0.563812
Target:  5'- gUCGaaGAUGUCGAUguucuugagggcGAGGUCGACCu- -3'
miRNA:   3'- -GGCggCUGCGGCUA------------CUCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 51838 0.68 0.573944
Target:  5'- uUGCCcGCGCCG---GGG-CGGCCGCc -3'
miRNA:   3'- gGCGGcUGCGGCuacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 57804 0.68 0.573944
Target:  5'- gCGCCG-CGCCGccGAGGUggCGAaggaGCg -3'
miRNA:   3'- gGCGGCuGCGGCuaCUCCA--GCUgg--CG- -5'
18286 3' -58.8 NC_004681.1 + 52377 0.68 0.573944
Target:  5'- cCCGCggcgCGAUGUCGA--GGGUCGgaugaguaACCGCg -3'
miRNA:   3'- -GGCG----GCUGCGGCUacUCCAGC--------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 47106 0.68 0.573944
Target:  5'- gCCGCCGcCGCUGAgcgacGAGaacgccGagGGCCGCg -3'
miRNA:   3'- -GGCGGCuGCGGCUa----CUC------CagCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33476 0.68 0.573944
Target:  5'- -gGCCGugGCUGAUccuGGU-GGCCGUc -3'
miRNA:   3'- ggCGGCugCGGCUAcu-CCAgCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 14398 0.68 0.580043
Target:  5'- aUCGCCGACGCCaagcgcaagcAGG-CGGCCGa -3'
miRNA:   3'- -GGCGGCUGCGGcuac------UCCaGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 35549 0.68 0.584117
Target:  5'- aCGUCuGCGCCGuUGuAGG-CGugCGCa -3'
miRNA:   3'- gGCGGcUGCGGCuAC-UCCaGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 22587 0.67 0.593303
Target:  5'- uCCGa-GGCGCCGAUGAuGGUgGcguugucGCCGUu -3'
miRNA:   3'- -GGCggCUGCGGCUACU-CCAgC-------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 7915 0.67 0.594326
Target:  5'- gCCGCCGAggaGCCGGaagaagUGGuGGUCGAagaGCc -3'
miRNA:   3'- -GGCGGCUg--CGGCU------ACU-CCAGCUgg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.