Results 61 - 80 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18286 | 3' | -58.8 | NC_004681.1 | + | 51838 | 0.68 | 0.573944 |
Target: 5'- uUGCCcGCGCCG---GGG-CGGCCGCc -3' miRNA: 3'- gGCGGcUGCGGCuacUCCaGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 57804 | 0.68 | 0.573944 |
Target: 5'- gCGCCG-CGCCGccGAGGUggCGAaggaGCg -3' miRNA: 3'- gGCGGCuGCGGCuaCUCCA--GCUgg--CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 47106 | 0.68 | 0.573944 |
Target: 5'- gCCGCCGcCGCUGAgcgacGAGaacgccGagGGCCGCg -3' miRNA: 3'- -GGCGGCuGCGGCUa----CUC------CagCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 33476 | 0.68 | 0.573944 |
Target: 5'- -gGCCGugGCUGAUccuGGU-GGCCGUc -3' miRNA: 3'- ggCGGCugCGGCUAcu-CCAgCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 52377 | 0.68 | 0.573944 |
Target: 5'- cCCGCggcgCGAUGUCGA--GGGUCGgaugaguaACCGCg -3' miRNA: 3'- -GGCG----GCUGCGGCUacUCCAGC--------UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 13833 | 0.68 | 0.563812 |
Target: 5'- gUCGaaGAUGUCGAUguucuugagggcGAGGUCGACCu- -3' miRNA: 3'- -GGCggCUGCGGCUA------------CUCCAGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 40442 | 0.68 | 0.563812 |
Target: 5'- aCC-UCGGCGCCcuUGAGG-CGGCCGa -3' miRNA: 3'- -GGcGGCUGCGGcuACUCCaGCUGGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 44780 | 0.68 | 0.561791 |
Target: 5'- gCCGCCGuCGCCGuugccgucgagGAGGguguccUUGGCCuGCa -3' miRNA: 3'- -GGCGGCuGCGGCua---------CUCC------AGCUGG-CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 61084 | 0.68 | 0.557756 |
Target: 5'- aCCGCCGACcCCGAgcUGcGGUUcacccaaggugggcaGGCCGUc -3' miRNA: 3'- -GGCGGCUGcGGCU--ACuCCAG---------------CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 9017 | 0.68 | 0.543699 |
Target: 5'- gCCGuuGACGCCG---GGGUacccGCCGCc -3' miRNA: 3'- -GGCggCUGCGGCuacUCCAgc--UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 37813 | 0.68 | 0.543699 |
Target: 5'- gCUGCCcuGAUgGUCGGUGAGGUUGAUCa- -3' miRNA: 3'- -GGCGG--CUG-CGGCUACUCCAGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 5662 | 0.69 | 0.523827 |
Target: 5'- uUCGCCGACGac---GAGGUCGugccgauCCGCu -3' miRNA: 3'- -GGCGGCUGCggcuaCUCCAGCu------GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 25154 | 0.69 | 0.523826 |
Target: 5'- gCCGCCcGCGCCGcccucUGcGGUC-ACCGUg -3' miRNA: 3'- -GGCGGcUGCGGCu----ACuCCAGcUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 27146 | 0.69 | 0.523826 |
Target: 5'- uCCcUCGACGCCGAccacgGAcucgaaGG-CGACCGCg -3' miRNA: 3'- -GGcGGCUGCGGCUa----CU------CCaGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 18396 | 0.69 | 0.523826 |
Target: 5'- gCUGCUGAcCGCCaGUcGAGGacugCGGCCGUg -3' miRNA: 3'- -GGCGGCU-GCGGcUA-CUCCa---GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 73231 | 0.69 | 0.519884 |
Target: 5'- aCGCUGAgGCUGAggcugucgaggcgGAGGcagaGACCGCu -3' miRNA: 3'- gGCGGCUgCGGCUa------------CUCCag--CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 25319 | 0.69 | 0.513994 |
Target: 5'- gCCGCCGuuGuuGAaGAagcGGUCG-CCGCc -3' miRNA: 3'- -GGCGGCugCggCUaCU---CCAGCuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 3745 | 0.69 | 0.513994 |
Target: 5'- gCGgCGACGUCGAaggcGAGGgCGGCCuGCu -3' miRNA: 3'- gGCgGCUGCGGCUa---CUCCaGCUGG-CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 17786 | 0.69 | 0.508131 |
Target: 5'- aCCGUCGAggcguagucgggagcUGCCGGUGAgagcgGGaUCGaACCGCc -3' miRNA: 3'- -GGCGGCU---------------GCGGCUACU-----CC-AGC-UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 68889 | 0.69 | 0.50521 |
Target: 5'- gCgGCCGACGCCaucGAGGcgcugaccaucgucaCGGCCGCc -3' miRNA: 3'- -GgCGGCUGCGGcuaCUCCa--------------GCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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