Results 81 - 100 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18286 | 3' | -58.8 | NC_004681.1 | + | 22044 | 0.69 | 0.504238 |
Target: 5'- aCGCCGGcCGCCGAcgaaGAGGUCcuucCCGa -3' miRNA: 3'- gGCGGCU-GCGGCUa---CUCCAGcu--GGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 19697 | 0.69 | 0.504238 |
Target: 5'- aCGCCGcagcGCGCCca-GAGcucGUUGACCGCg -3' miRNA: 3'- gGCGGC----UGCGGcuaCUC---CAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 14630 | 0.69 | 0.504238 |
Target: 5'- aUGCCGACcCCGuUGAGGaUCGACUuCa -3' miRNA: 3'- gGCGGCUGcGGCuACUCC-AGCUGGcG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 39193 | 0.69 | 0.504238 |
Target: 5'- cUCGCCcucGACGUCGAgGAcgucagccuGGUCGACUGUc -3' miRNA: 3'- -GGCGG---CUGCGGCUaCU---------CCAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 51087 | 0.69 | 0.501326 |
Target: 5'- aCGUCGACGCCGGUGuuccauugacgcuuGGcGUCGG-CGUa -3' miRNA: 3'- gGCGGCUGCGGCUAC--------------UC-CAGCUgGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 45617 | 0.69 | 0.494562 |
Target: 5'- gCCGCCGuCGUCGcccuuguaGUaGGGGUCG-CCGUc -3' miRNA: 3'- -GGCGGCuGCGGC--------UA-CUCCAGCuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 41677 | 0.69 | 0.494562 |
Target: 5'- aUCGCCGuGCGCUGccugcGGGGUggcgcugcauggCGGCCGCg -3' miRNA: 3'- -GGCGGC-UGCGGCua---CUCCA------------GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 8644 | 0.69 | 0.494562 |
Target: 5'- cCCGUCGAa-CCGAaGGGGUucuggccgaUGGCCGCg -3' miRNA: 3'- -GGCGGCUgcGGCUaCUCCA---------GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 12262 | 0.69 | 0.484973 |
Target: 5'- gUGCUGugGCCGAcucccGAGGUCGcCCc- -3' miRNA: 3'- gGCGGCugCGGCUa----CUCCAGCuGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 34345 | 0.69 | 0.484973 |
Target: 5'- aCGCCG-CGgCGGcgUGAgGGUUGugCGCg -3' miRNA: 3'- gGCGGCuGCgGCU--ACU-CCAGCugGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 22472 | 0.69 | 0.484972 |
Target: 5'- uCCaCuCGACGUCGggGAGGUCcucGCCGUg -3' miRNA: 3'- -GGcG-GCUGCGGCuaCUCCAGc--UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 35553 | 0.69 | 0.484972 |
Target: 5'- gCGCaCGugGCUuAUGAGGUUGAUaaaGCc -3' miRNA: 3'- gGCG-GCugCGGcUACUCCAGCUGg--CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28355 | 0.69 | 0.475473 |
Target: 5'- aCC-CCGGCGCCGAUGcacuUCGACCu- -3' miRNA: 3'- -GGcGGCUGCGGCUACucc-AGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 22380 | 0.69 | 0.475473 |
Target: 5'- uCC-CCGACGUCGAgugGAcgcuGGUCaccccGGCCGCg -3' miRNA: 3'- -GGcGGCUGCGGCUa--CU----CCAG-----CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 5552 | 0.69 | 0.475473 |
Target: 5'- -aGCUGAUGCCGAUGcacccgucacGGGUCG-CCa- -3' miRNA: 3'- ggCGGCUGCGGCUAC----------UCCAGCuGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 41153 | 0.69 | 0.475472 |
Target: 5'- gCGgCGGCGCCGAaGAGGgcCG-UCGCa -3' miRNA: 3'- gGCgGCUGCGGCUaCUCCa-GCuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 51318 | 0.7 | 0.466066 |
Target: 5'- uCCGCCGAcgucaucaccguCGCCGcgGAGcUCGGCaaGCa -3' miRNA: 3'- -GGCGGCU------------GCGGCuaCUCcAGCUGg-CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 42551 | 0.7 | 0.466066 |
Target: 5'- gCGCCGACGUgguaGAUGAaguacgGGUCGugcagGCUGCg -3' miRNA: 3'- gGCGGCUGCGg---CUACU------CCAGC-----UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 44260 | 0.7 | 0.453984 |
Target: 5'- gCGCCGuagcacucguauucGCgGCCGGUGAGGgccaGGcCCGCg -3' miRNA: 3'- gGCGGC--------------UG-CGGCUACUCCag--CU-GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 45117 | 0.7 | 0.447549 |
Target: 5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3' miRNA: 3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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