miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 19697 0.69 0.504238
Target:  5'- aCGCCGcagcGCGCCca-GAGcucGUUGACCGCg -3'
miRNA:   3'- gGCGGC----UGCGGcuaCUC---CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 21306 0.73 0.315091
Target:  5'- cCCGCUGAagaaggcgaccauCGUCG-UGGacguGGUCGACCGCa -3'
miRNA:   3'- -GGCGGCU-------------GCGGCuACU----CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 21437 0.73 0.315816
Target:  5'- cCCG-UGACGCCGcUGcGGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCGGCuACuCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 22044 0.69 0.504238
Target:  5'- aCGCCGGcCGCCGAcgaaGAGGUCcuucCCGa -3'
miRNA:   3'- gGCGGCU-GCGGCUa---CUCCAGcu--GGCg -5'
18286 3' -58.8 NC_004681.1 + 22380 0.69 0.475473
Target:  5'- uCC-CCGACGUCGAgugGAcgcuGGUCaccccGGCCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa--CU----CCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 22472 0.69 0.484972
Target:  5'- uCCaCuCGACGUCGggGAGGUCcucGCCGUg -3'
miRNA:   3'- -GGcG-GCUGCGGCuaCUCCAGc--UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 22587 0.67 0.593303
Target:  5'- uCCGa-GGCGCCGAUGAuGGUgGcguugucGCCGUu -3'
miRNA:   3'- -GGCggCUGCGGCUACU-CCAgC-------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 23429 0.67 0.622006
Target:  5'- aCCGUCGACcucgGCCacucccgcaguucuGAUG-GGUCGggcGCCGCc -3'
miRNA:   3'- -GGCGGCUG----CGG--------------CUACuCCAGC---UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 24842 0.7 0.420559
Target:  5'- gCGUCGGCGgCGcgGGcGG-CGGCCGCc -3'
miRNA:   3'- gGCGGCUGCgGCuaCU-CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 24927 1.13 0.000478
Target:  5'- gCCGCCGACGCCGAUGAGGUCGACCGCg -3'
miRNA:   3'- -GGCGGCUGCGGCUACUCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 24969 0.73 0.287807
Target:  5'- cUCGCCauUGCUGGUGAGGgagccuuggCGGCCGCc -3'
miRNA:   3'- -GGCGGcuGCGGCUACUCCa--------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25088 0.66 0.697679
Target:  5'- gCCGCCGACGCCuGUGccgccagagcccccGUCG-CCGg -3'
miRNA:   3'- -GGCGGCUGCGGcUACuc------------CAGCuGGCg -5'
18286 3' -58.8 NC_004681.1 + 25154 0.69 0.523826
Target:  5'- gCCGCCcGCGCCGcccucUGcGGUC-ACCGUg -3'
miRNA:   3'- -GGCGGcUGCGGCu----ACuCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25197 0.67 0.614818
Target:  5'- cCUGgCGGCGCUGGcaacgGcGG-CGACCGCu -3'
miRNA:   3'- -GGCgGCUGCGGCUa----CuCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25319 0.69 0.513994
Target:  5'- gCCGCCGuuGuuGAaGAagcGGUCG-CCGCc -3'
miRNA:   3'- -GGCGGCugCggCUaCU---CCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 26298 0.66 0.676357
Target:  5'- uCCGaCGugGCCGcacUGcgccGGGUCGAUUGUg -3'
miRNA:   3'- -GGCgGCugCGGCu--AC----UCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 26309 0.66 0.686535
Target:  5'- gCCGCCGugGCgGGccAGGaCGuuuCCGUc -3'
miRNA:   3'- -GGCGGCugCGgCUacUCCaGCu--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 26868 0.66 0.686535
Target:  5'- aCCGCCGA-GCCcgguaAUGGGaGUgGACaCGCc -3'
miRNA:   3'- -GGCGGCUgCGGc----UACUC-CAgCUG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 27146 0.69 0.523826
Target:  5'- uCCcUCGACGCCGAccacgGAcucgaaGG-CGACCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa----CU------CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 27491 0.71 0.41528
Target:  5'- aCCGCUGAcccugaccuggggcaCGCCucaGAUcGAGGUCGcACCGUc -3'
miRNA:   3'- -GGCGGCU---------------GCGG---CUA-CUCCAGC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.