miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 27713 0.66 0.655898
Target:  5'- gCCGCCGccaGCGCCaccGAGGgUGACCcagGCg -3'
miRNA:   3'- -GGCGGC---UGCGGcuaCUCCaGCUGG---CG- -5'
18286 3' -58.8 NC_004681.1 + 28020 0.66 0.655898
Target:  5'- uUGCCG-UGCCGccGAGGccccgCGuGCCGCu -3'
miRNA:   3'- gGCGGCuGCGGCuaCUCCa----GC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28044 0.67 0.604562
Target:  5'- gCGCUGGCGCUGGcggucGAGGcggUGGCgGCa -3'
miRNA:   3'- gGCGGCUGCGGCUa----CUCCa--GCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 28228 0.67 0.614818
Target:  5'- uCCGCCGcCGCCGuugcccgcGGGGcCG-UCGCu -3'
miRNA:   3'- -GGCGGCuGCGGCua------CUCCaGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28355 0.69 0.475473
Target:  5'- aCC-CCGGCGCCGAUGcacuUCGACCu- -3'
miRNA:   3'- -GGcGGCUGCGGCUACucc-AGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 28682 0.7 0.447549
Target:  5'- cCCGCgGGCGCUGAcgUGuucgcgcuGGUCgcauggGACCGCu -3'
miRNA:   3'- -GGCGgCUGCGGCU--ACu-------CCAG------CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 29249 0.7 0.420559
Target:  5'- gUCGUugaCGugGCCGuUGAGGUCGcCaCGCc -3'
miRNA:   3'- -GGCG---GCugCGGCuACUCCAGCuG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 32203 0.72 0.330574
Target:  5'- aCCGCUuccugGAUGCCGGUGAcgaccuuGUCGGCCGg -3'
miRNA:   3'- -GGCGG-----CUGCGGCUACUc------CAGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 32691 0.73 0.287808
Target:  5'- cCCGCCGACGUCgcgcggcuggugGAUGAGGaccUCuuCCGCu -3'
miRNA:   3'- -GGCGGCUGCGG------------CUACUCC---AGcuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 32784 0.7 0.429447
Target:  5'- gCCGCgCGACGUCGgcGGGGUacccgGACCa- -3'
miRNA:   3'- -GGCG-GCUGCGGCuaCUCCAg----CUGGcg -5'
18286 3' -58.8 NC_004681.1 + 33051 0.67 0.645636
Target:  5'- uUGCCGAagcacccgcCGCCGAUGAaGUCcuucagcgauGCCGCa -3'
miRNA:   3'- gGCGGCU---------GCGGCUACUcCAGc---------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33345 0.67 0.614818
Target:  5'- cCCGCCcgcacaucACGCUGGcUGAGacCGGCCGCg -3'
miRNA:   3'- -GGCGGc-------UGCGGCU-ACUCcaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33476 0.68 0.573944
Target:  5'- -gGCCGugGCUGAUccuGGU-GGCCGUc -3'
miRNA:   3'- ggCGGCugCGGCUAcu-CCAgCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 34011 0.66 0.686535
Target:  5'- gUGcCCGuCGUCGu---GGUCGACUGCg -3'
miRNA:   3'- gGC-GGCuGCGGCuacuCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 34345 0.69 0.484973
Target:  5'- aCGCCG-CGgCGGcgUGAgGGUUGugCGCg -3'
miRNA:   3'- gGCGGCuGCgGCU--ACU-CCAGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 35549 0.68 0.584117
Target:  5'- aCGUCuGCGCCGuUGuAGG-CGugCGCa -3'
miRNA:   3'- gGCGGcUGCGGCuAC-UCCaGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 35553 0.69 0.484972
Target:  5'- gCGCaCGugGCUuAUGAGGUUGAUaaaGCc -3'
miRNA:   3'- gGCG-GCugCGGcUACUCCAGCUGg--CG- -5'
18286 3' -58.8 NC_004681.1 + 36089 0.66 0.676356
Target:  5'- aCGagauCGACGCCGAguugGAgcuggcaaucauGGgcuaCGACCGCa -3'
miRNA:   3'- gGCg---GCUGCGGCUa---CU------------CCa---GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 36867 0.66 0.666142
Target:  5'- gCGCuCGGCGuuGAUcAGGUCuAUUGCa -3'
miRNA:   3'- gGCG-GCUGCggCUAcUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 37813 0.68 0.543699
Target:  5'- gCUGCCcuGAUgGUCGGUGAGGUUGAUCa- -3'
miRNA:   3'- -GGCGG--CUG-CGGCUACUCCAGCUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.