miRNA display CGI


Results 81 - 100 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 38326 0.66 0.696668
Target:  5'- gCCuaUGGCGCCGccGcGGGacgucuUCGGCCGCc -3'
miRNA:   3'- -GGcgGCUGCGGCuaC-UCC------AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 38985 0.67 0.594326
Target:  5'- gCGCUggGugGCCGAcGAGGaaggcgucaacgUCGACgGCc -3'
miRNA:   3'- gGCGG--CugCGGCUaCUCC------------AGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 39193 0.69 0.504238
Target:  5'- cUCGCCcucGACGUCGAgGAcgucagccuGGUCGACUGUc -3'
miRNA:   3'- -GGCGG---CUGCGGCUaCU---------CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 39327 0.7 0.429447
Target:  5'- gCCG-CGGCGCaCGGUGAGcugacaGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCG-GCUACUC------CAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 40075 0.7 0.447549
Target:  5'- -gGCCGA-GCCGGUGA-GUUGACCcgGCg -3'
miRNA:   3'- ggCGGCUgCGGCUACUcCAGCUGG--CG- -5'
18286 3' -58.8 NC_004681.1 + 40442 0.68 0.563812
Target:  5'- aCC-UCGGCGCCcuUGAGG-CGGCCGa -3'
miRNA:   3'- -GGcGGCUGCGGcuACUCCaGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 41069 0.67 0.625088
Target:  5'- gCGCCGcCGCCGAUGuGcUC-ACCGa -3'
miRNA:   3'- gGCGGCuGCGGCUACuCcAGcUGGCg -5'
18286 3' -58.8 NC_004681.1 + 41153 0.69 0.475472
Target:  5'- gCGgCGGCGCCGAaGAGGgcCG-UCGCa -3'
miRNA:   3'- gGCgGCUGCGGCUaCUCCa-GCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 41677 0.69 0.494562
Target:  5'- aUCGCCGuGCGCUGccugcGGGGUggcgcugcauggCGGCCGCg -3'
miRNA:   3'- -GGCGGC-UGCGGCua---CUCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 42056 0.67 0.635363
Target:  5'- gCGCCGguuaagcagGCGCCauUGAGGUUGGCgucuUGCa -3'
miRNA:   3'- gGCGGC---------UGCGGcuACUCCAGCUG----GCG- -5'
18286 3' -58.8 NC_004681.1 + 42551 0.7 0.466066
Target:  5'- gCGCCGACGUgguaGAUGAaguacgGGUCGugcagGCUGCg -3'
miRNA:   3'- gGCGGCUGCGg---CUACU------CCAGC-----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 44260 0.7 0.453984
Target:  5'- gCGCCGuagcacucguauucGCgGCCGGUGAGGgccaGGcCCGCg -3'
miRNA:   3'- gGCGGC--------------UG-CGGCUACUCCag--CU-GGCG- -5'
18286 3' -58.8 NC_004681.1 + 44780 0.68 0.561791
Target:  5'- gCCGCCGuCGCCGuugccgucgagGAGGguguccUUGGCCuGCa -3'
miRNA:   3'- -GGCGGCuGCGGCua---------CUCC------AGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 45062 0.67 0.635364
Target:  5'- aCGCCGAagcaucCGCCGcggucGAGGcccUCG-CCGCg -3'
miRNA:   3'- gGCGGCU------GCGGCua---CUCC---AGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45117 0.7 0.447549
Target:  5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3'
miRNA:   3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45200 0.66 0.686535
Target:  5'- gCGUCGGCcCCGGucuUGAGcgaGACCGCg -3'
miRNA:   3'- gGCGGCUGcGGCU---ACUCcagCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45617 0.69 0.494562
Target:  5'- gCCGCCGuCGUCGcccuuguaGUaGGGGUCG-CCGUc -3'
miRNA:   3'- -GGCGGCuGCGGC--------UA-CUCCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45695 0.7 0.447549
Target:  5'- -gGCCGACGCgGAgGAGGcacCGGCCa- -3'
miRNA:   3'- ggCGGCUGCGgCUaCUCCa--GCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 46052 0.66 0.666142
Target:  5'- aCCGUCGAauucuacugGCUGGacaugGAaGUCGGCCGCg -3'
miRNA:   3'- -GGCGGCUg--------CGGCUa----CUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 46818 0.67 0.614818
Target:  5'- gCGUCGAUGCCGcgGAaGUUGaaguGCUGCu -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCAGC----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.