miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 56414 0.67 0.645636
Target:  5'- aCGCCuuGGCGCCG-UGGGuGUgcuUGACCGg -3'
miRNA:   3'- gGCGG--CUGCGGCuACUC-CA---GCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 56007 0.67 0.604562
Target:  5'- -aGCgCGACGCCaagGAGGgCGAccuCCGCa -3'
miRNA:   3'- ggCG-GCUGCGGcuaCUCCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 55919 0.74 0.26179
Target:  5'- aUGCCGAgCGCCu-UGAGGucaUCGACCGUc -3'
miRNA:   3'- gGCGGCU-GCGGcuACUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 55892 0.73 0.293935
Target:  5'- gCGCCGAagaacaagaacuaCGCCGcgcAGGUCGugCGCg -3'
miRNA:   3'- gGCGGCU-------------GCGGCuacUCCAGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 54859 0.72 0.361591
Target:  5'- aCCgGCUGACGCCa---AGGaCGACCGCg -3'
miRNA:   3'- -GG-CGGCUGCGGcuacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 52625 0.71 0.369655
Target:  5'- gCUGCCucGGCcaaGUCGGUGAGGUCGAacUCGCc -3'
miRNA:   3'- -GGCGG--CUG---CGGCUACUCCAGCU--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 52377 0.68 0.573944
Target:  5'- cCCGCggcgCGAUGUCGA--GGGUCGgaugaguaACCGCg -3'
miRNA:   3'- -GGCG----GCUGCGGCUacUCCAGC--------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 51838 0.68 0.573944
Target:  5'- uUGCCcGCGCCG---GGG-CGGCCGCc -3'
miRNA:   3'- gGCGGcUGCGGCuacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 51499 0.73 0.285788
Target:  5'- gCCGCCagcucggcuacaccGACGCCaccaccuccGAaGAGGUCGACgCGCu -3'
miRNA:   3'- -GGCGG--------------CUGCGG---------CUaCUCCAGCUG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 51421 0.66 0.676356
Target:  5'- uCCGCggCGACGgUGAUGAcGUCGGCgGa -3'
miRNA:   3'- -GGCG--GCUGCgGCUACUcCAGCUGgCg -5'
18286 3' -58.8 NC_004681.1 + 51318 0.7 0.466066
Target:  5'- uCCGCCGAcgucaucaccguCGCCGcgGAGcUCGGCaaGCa -3'
miRNA:   3'- -GGCGGCU------------GCGGCuaCUCcAGCUGg-CG- -5'
18286 3' -58.8 NC_004681.1 + 51133 0.67 0.635363
Target:  5'- cUCGCCGuCGCCGA--GGG-CGAUgaCGCc -3'
miRNA:   3'- -GGCGGCuGCGGCUacUCCaGCUG--GCG- -5'
18286 3' -58.8 NC_004681.1 + 51087 0.69 0.501326
Target:  5'- aCGUCGACGCCGGUGuuccauugacgcuuGGcGUCGG-CGUa -3'
miRNA:   3'- gGCGGCUGCGGCUAC--------------UC-CAGCUgGCG- -5'
18286 3' -58.8 NC_004681.1 + 50832 0.67 0.614818
Target:  5'- aCCGCCacccagcuCGCCGAaGAGGUgaagCGccucGCCGCc -3'
miRNA:   3'- -GGCGGcu------GCGGCUaCUCCA----GC----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 49424 0.83 0.063225
Target:  5'- gCCGCCGugGCggaCGGUGAGGUUgugcaGACCGCc -3'
miRNA:   3'- -GGCGGCugCG---GCUACUCCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 47106 0.68 0.573944
Target:  5'- gCCGCCGcCGCUGAgcgacGAGaacgccGagGGCCGCg -3'
miRNA:   3'- -GGCGGCuGCGGCUa----CUC------CagCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 46818 0.67 0.614818
Target:  5'- gCGUCGAUGCCGcgGAaGUUGaaguGCUGCu -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCAGC----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 46052 0.66 0.666142
Target:  5'- aCCGUCGAauucuacugGCUGGacaugGAaGUCGGCCGCg -3'
miRNA:   3'- -GGCGGCUg--------CGGCUa----CUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45695 0.7 0.447549
Target:  5'- -gGCCGACGCgGAgGAGGcacCGGCCa- -3'
miRNA:   3'- ggCGGCUGCGgCUaCUCCa--GCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 45617 0.69 0.494562
Target:  5'- gCCGCCGuCGUCGcccuuguaGUaGGGGUCG-CCGUc -3'
miRNA:   3'- -GGCGGCuGCGGC--------UA-CUCCAGCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.