Results 61 - 80 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18286 | 3' | -58.8 | NC_004681.1 | + | 35549 | 0.68 | 0.584117 |
Target: 5'- aCGUCuGCGCCGuUGuAGG-CGugCGCa -3' miRNA: 3'- gGCGGcUGCGGCuAC-UCCaGCugGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 34345 | 0.69 | 0.484973 |
Target: 5'- aCGCCG-CGgCGGcgUGAgGGUUGugCGCg -3' miRNA: 3'- gGCGGCuGCgGCU--ACU-CCAGCugGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 34011 | 0.66 | 0.686535 |
Target: 5'- gUGcCCGuCGUCGu---GGUCGACUGCg -3' miRNA: 3'- gGC-GGCuGCGGCuacuCCAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 33476 | 0.68 | 0.573944 |
Target: 5'- -gGCCGugGCUGAUccuGGU-GGCCGUc -3' miRNA: 3'- ggCGGCugCGGCUAcu-CCAgCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 33345 | 0.67 | 0.614818 |
Target: 5'- cCCGCCcgcacaucACGCUGGcUGAGacCGGCCGCg -3' miRNA: 3'- -GGCGGc-------UGCGGCU-ACUCcaGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 33051 | 0.67 | 0.645636 |
Target: 5'- uUGCCGAagcacccgcCGCCGAUGAaGUCcuucagcgauGCCGCa -3' miRNA: 3'- gGCGGCU---------GCGGCUACUcCAGc---------UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 32784 | 0.7 | 0.429447 |
Target: 5'- gCCGCgCGACGUCGgcGGGGUacccgGACCa- -3' miRNA: 3'- -GGCG-GCUGCGGCuaCUCCAg----CUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 32691 | 0.73 | 0.287808 |
Target: 5'- cCCGCCGACGUCgcgcggcuggugGAUGAGGaccUCuuCCGCu -3' miRNA: 3'- -GGCGGCUGCGG------------CUACUCC---AGcuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 32203 | 0.72 | 0.330574 |
Target: 5'- aCCGCUuccugGAUGCCGGUGAcgaccuuGUCGGCCGg -3' miRNA: 3'- -GGCGG-----CUGCGGCUACUc------CAGCUGGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 29249 | 0.7 | 0.420559 |
Target: 5'- gUCGUugaCGugGCCGuUGAGGUCGcCaCGCc -3' miRNA: 3'- -GGCG---GCugCGGCuACUCCAGCuG-GCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28682 | 0.7 | 0.447549 |
Target: 5'- cCCGCgGGCGCUGAcgUGuucgcgcuGGUCgcauggGACCGCu -3' miRNA: 3'- -GGCGgCUGCGGCU--ACu-------CCAG------CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28355 | 0.69 | 0.475473 |
Target: 5'- aCC-CCGGCGCCGAUGcacuUCGACCu- -3' miRNA: 3'- -GGcGGCUGCGGCUACucc-AGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28228 | 0.67 | 0.614818 |
Target: 5'- uCCGCCGcCGCCGuugcccgcGGGGcCG-UCGCu -3' miRNA: 3'- -GGCGGCuGCGGCua------CUCCaGCuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28044 | 0.67 | 0.604562 |
Target: 5'- gCGCUGGCGCUGGcggucGAGGcggUGGCgGCa -3' miRNA: 3'- gGCGGCUGCGGCUa----CUCCa--GCUGgCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28020 | 0.66 | 0.655898 |
Target: 5'- uUGCCG-UGCCGccGAGGccccgCGuGCCGCu -3' miRNA: 3'- gGCGGCuGCGGCuaCUCCa----GC-UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 27713 | 0.66 | 0.655898 |
Target: 5'- gCCGCCGccaGCGCCaccGAGGgUGACCcagGCg -3' miRNA: 3'- -GGCGGC---UGCGGcuaCUCCaGCUGG---CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 27491 | 0.71 | 0.41528 |
Target: 5'- aCCGCUGAcccugaccuggggcaCGCCucaGAUcGAGGUCGcACCGUc -3' miRNA: 3'- -GGCGGCU---------------GCGG---CUA-CUCCAGC-UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 27146 | 0.69 | 0.523826 |
Target: 5'- uCCcUCGACGCCGAccacgGAcucgaaGG-CGACCGCg -3' miRNA: 3'- -GGcGGCUGCGGCUa----CU------CCaGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 26868 | 0.66 | 0.686535 |
Target: 5'- aCCGCCGA-GCCcgguaAUGGGaGUgGACaCGCc -3' miRNA: 3'- -GGCGGCUgCGGc----UACUC-CAgCUG-GCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 26309 | 0.66 | 0.686535 |
Target: 5'- gCCGCCGugGCgGGccAGGaCGuuuCCGUc -3' miRNA: 3'- -GGCGGCugCGgCUacUCCaGCu--GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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