Results 41 - 60 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18286 | 3' | -58.8 | NC_004681.1 | + | 55892 | 0.73 | 0.293935 |
Target: 5'- gCGCCGAagaacaagaacuaCGCCGcgcAGGUCGugCGCg -3' miRNA: 3'- gGCGGCU-------------GCGGCuacUCCAGCugGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 32691 | 0.73 | 0.287808 |
Target: 5'- cCCGCCGACGUCgcgcggcuggugGAUGAGGaccUCuuCCGCu -3' miRNA: 3'- -GGCGGCUGCGG------------CUACUCC---AGcuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 51499 | 0.73 | 0.285788 |
Target: 5'- gCCGCCagcucggcuacaccGACGCCaccaccuccGAaGAGGUCGACgCGCu -3' miRNA: 3'- -GGCGG--------------CUGCGG---------CUaCUCCAGCUG-GCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 65075 | 0.74 | 0.249514 |
Target: 5'- cCCGCUcggGugGUCGccGAGGUCGGCCugGCa -3' miRNA: 3'- -GGCGG---CugCGGCuaCUCCAGCUGG--CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 640 | 0.74 | 0.249514 |
Target: 5'- cCCGgugaUCGACGCCGAUccGGUCGACCu- -3' miRNA: 3'- -GGC----GGCUGCGGCUAcuCCAGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 45117 | 0.7 | 0.447549 |
Target: 5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3' miRNA: 3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28682 | 0.7 | 0.447549 |
Target: 5'- cCCGCgGGCGCUGAcgUGuucgcgcuGGUCgcauggGACCGCu -3' miRNA: 3'- -GGCGgCUGCGGCU--ACu-------CCAG------CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 33476 | 0.68 | 0.573944 |
Target: 5'- -gGCCGugGCUGAUccuGGU-GGCCGUc -3' miRNA: 3'- ggCGGCugCGGCUAcu-CCAgCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 40442 | 0.68 | 0.563812 |
Target: 5'- aCC-UCGGCGCCcuUGAGG-CGGCCGa -3' miRNA: 3'- -GGcGGCUGCGGcuACUCCaGCUGGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 61084 | 0.68 | 0.557756 |
Target: 5'- aCCGCCGACcCCGAgcUGcGGUUcacccaaggugggcaGGCCGUc -3' miRNA: 3'- -GGCGGCUGcGGCU--ACuCCAG---------------CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 37813 | 0.68 | 0.543699 |
Target: 5'- gCUGCCcuGAUgGUCGGUGAGGUUGAUCa- -3' miRNA: 3'- -GGCGG--CUG-CGGCUACUCCAGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 5662 | 0.69 | 0.523827 |
Target: 5'- uUCGCCGACGac---GAGGUCGugccgauCCGCu -3' miRNA: 3'- -GGCGGCUGCggcuaCUCCAGCu------GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 68889 | 0.69 | 0.50521 |
Target: 5'- gCgGCCGACGCCaucGAGGcgcugaccaucgucaCGGCCGCc -3' miRNA: 3'- -GgCGGCUGCGGcuaCUCCa--------------GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 39193 | 0.69 | 0.504238 |
Target: 5'- cUCGCCcucGACGUCGAgGAcgucagccuGGUCGACUGUc -3' miRNA: 3'- -GGCGG---CUGCGGCUaCU---------CCAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 34345 | 0.69 | 0.484973 |
Target: 5'- aCGCCG-CGgCGGcgUGAgGGUUGugCGCg -3' miRNA: 3'- gGCGGCuGCgGCU--ACU-CCAGCugGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 12262 | 0.69 | 0.484973 |
Target: 5'- gUGCUGugGCCGAcucccGAGGUCGcCCc- -3' miRNA: 3'- gGCGGCugCGGCUa----CUCCAGCuGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28355 | 0.69 | 0.475473 |
Target: 5'- aCC-CCGGCGCCGAUGcacuUCGACCu- -3' miRNA: 3'- -GGcGGCUGCGGCUACucc-AGCUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 22380 | 0.69 | 0.475473 |
Target: 5'- uCC-CCGACGUCGAgugGAcgcuGGUCaccccGGCCGCg -3' miRNA: 3'- -GGcGGCUGCGGCUa--CU----CCAG-----CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 5552 | 0.69 | 0.475473 |
Target: 5'- -aGCUGAUGCCGAUGcacccgucacGGGUCG-CCa- -3' miRNA: 3'- ggCGGCUGCGGCUAC----------UCCAGCuGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 51318 | 0.7 | 0.466066 |
Target: 5'- uCCGCCGAcgucaucaccguCGCCGcgGAGcUCGGCaaGCa -3' miRNA: 3'- -GGCGGCU------------GCGGCuaCUCcAGCUGg-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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