miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 34345 0.69 0.484973
Target:  5'- aCGCCG-CGgCGGcgUGAgGGUUGugCGCg -3'
miRNA:   3'- gGCGGCuGCgGCU--ACU-CCAGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 39193 0.69 0.504238
Target:  5'- cUCGCCcucGACGUCGAgGAcgucagccuGGUCGACUGUc -3'
miRNA:   3'- -GGCGG---CUGCGGCUaCU---------CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 17490 0.72 0.35365
Target:  5'- gCCGUCcauGAUGuuGAcGAGGuccUCGACCGCg -3'
miRNA:   3'- -GGCGG---CUGCggCUaCUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 14675 0.72 0.361591
Target:  5'- uUGCCGGUGCCGA--AGG-CGACUGCg -3'
miRNA:   3'- gGCGGCUGCGGCUacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 52625 0.71 0.369655
Target:  5'- gCUGCCucGGCcaaGUCGGUGAGGUCGAacUCGCc -3'
miRNA:   3'- -GGCGG--CUG---CGGCUACUCCAGCU--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 17944 0.71 0.391191
Target:  5'- aCGCCGggGCGCCcggguuGGUGAGGccggugccuugcgCGGCCGCc -3'
miRNA:   3'- gGCGGC--UGCGG------CUACUCCa------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 29249 0.7 0.420559
Target:  5'- gUCGUugaCGugGCCGuUGAGGUCGcCaCGCc -3'
miRNA:   3'- -GGCG---GCugCGGCuACUCCAGCuG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 18193 0.7 0.420559
Target:  5'- gCGCCGAUGCCGggGAuGcCGAugcccauacCCGCg -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCaGCU---------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 63053 0.7 0.424101
Target:  5'- gCCGCCGcCGCCaccaccgccgaaggaGAUGGaGUCGACCa- -3'
miRNA:   3'- -GGCGGCuGCGG---------------CUACUcCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 39327 0.7 0.429447
Target:  5'- gCCG-CGGCGCaCGGUGAGcugacaGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCG-GCUACUC------CAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 69004 0.72 0.35365
Target:  5'- gCgGCCGugacgauggucaGCGCCucGAUGGcGUCGGCCGCg -3'
miRNA:   3'- -GgCGGC------------UGCGG--CUACUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 32203 0.72 0.330574
Target:  5'- aCCGCUuccugGAUGCCGGUGAcgaccuuGUCGGCCGg -3'
miRNA:   3'- -GGCGG-----CUGCGGCUACUc------CAGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 25088 0.66 0.697679
Target:  5'- gCCGCCGACGCCuGUGccgccagagcccccGUCG-CCGg -3'
miRNA:   3'- -GGCGGCUGCGGcUACuc------------CAGCuGGCg -5'
18286 3' -58.8 NC_004681.1 + 49424 0.83 0.063225
Target:  5'- gCCGCCGugGCggaCGGUGAGGUUgugcaGACCGCc -3'
miRNA:   3'- -GGCGGCugCG---GCUACUCCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 58535 0.77 0.159376
Target:  5'- aCGUgGGCGCCGGucuUGGcGUCGGCCGCg -3'
miRNA:   3'- gGCGgCUGCGGCU---ACUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 19467 0.76 0.200071
Target:  5'- gUCGCCcAgGCCGGUGuGGUCGACC-Cg -3'
miRNA:   3'- -GGCGGcUgCGGCUACuCCAGCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 7367 0.75 0.243557
Target:  5'- gCGCacuCGGCGCCGAgGuGGaCGGCCGCg -3'
miRNA:   3'- gGCG---GCUGCGGCUaCuCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 55919 0.74 0.26179
Target:  5'- aUGCCGAgCGCCu-UGAGGucaUCGACCGUc -3'
miRNA:   3'- gGCGGCU-GCGGcuACUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 24969 0.73 0.287807
Target:  5'- cUCGCCauUGCUGGUGAGGgagccuuggCGGCCGCc -3'
miRNA:   3'- -GGCGGcuGCGGCUACUCCa--------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 21437 0.73 0.315816
Target:  5'- cCCG-UGACGCCGcUGcGGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCGGCuACuCCAGCUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.