miRNA display CGI


Results 121 - 136 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 25319 0.69 0.513994
Target:  5'- gCCGCCGuuGuuGAaGAagcGGUCG-CCGCc -3'
miRNA:   3'- -GGCGGCugCggCUaCU---CCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 17786 0.69 0.508131
Target:  5'- aCCGUCGAggcguagucgggagcUGCCGGUGAgagcgGGaUCGaACCGCc -3'
miRNA:   3'- -GGCGGCU---------------GCGGCUACU-----CC-AGC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 14630 0.69 0.504238
Target:  5'- aUGCCGACcCCGuUGAGGaUCGACUuCa -3'
miRNA:   3'- gGCGGCUGcGGCuACUCC-AGCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 19697 0.69 0.504238
Target:  5'- aCGCCGcagcGCGCCca-GAGcucGUUGACCGCg -3'
miRNA:   3'- gGCGGC----UGCGGcuaCUC---CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 22044 0.69 0.504238
Target:  5'- aCGCCGGcCGCCGAcgaaGAGGUCcuucCCGa -3'
miRNA:   3'- gGCGGCU-GCGGCUa---CUCCAGcu--GGCg -5'
18286 3' -58.8 NC_004681.1 + 51087 0.69 0.501326
Target:  5'- aCGUCGACGCCGGUGuuccauugacgcuuGGcGUCGG-CGUa -3'
miRNA:   3'- gGCGGCUGCGGCUAC--------------UC-CAGCUgGCG- -5'
18286 3' -58.8 NC_004681.1 + 8644 0.69 0.494562
Target:  5'- cCCGUCGAa-CCGAaGGGGUucuggccgaUGGCCGCg -3'
miRNA:   3'- -GGCGGCUgcGGCUaCUCCA---------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 41677 0.69 0.494562
Target:  5'- aUCGCCGuGCGCUGccugcGGGGUggcgcugcauggCGGCCGCg -3'
miRNA:   3'- -GGCGGC-UGCGGCua---CUCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45617 0.69 0.494562
Target:  5'- gCCGCCGuCGUCGcccuuguaGUaGGGGUCG-CCGUc -3'
miRNA:   3'- -GGCGGCuGCGGC--------UA-CUCCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 22472 0.69 0.484972
Target:  5'- uCCaCuCGACGUCGggGAGGUCcucGCCGUg -3'
miRNA:   3'- -GGcG-GCUGCGGCuaCUCCAGc--UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 35553 0.69 0.484972
Target:  5'- gCGCaCGugGCUuAUGAGGUUGAUaaaGCc -3'
miRNA:   3'- gGCG-GCugCGGcUACUCCAGCUGg--CG- -5'
18286 3' -58.8 NC_004681.1 + 41153 0.69 0.475472
Target:  5'- gCGgCGGCGCCGAaGAGGgcCG-UCGCa -3'
miRNA:   3'- gGCgGCUGCGGCUaCUCCa-GCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 42551 0.7 0.466066
Target:  5'- gCGCCGACGUgguaGAUGAaguacgGGUCGugcagGCUGCg -3'
miRNA:   3'- gGCGGCUGCGg---CUACU------CCAGC-----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 44260 0.7 0.453984
Target:  5'- gCGCCGuagcacucguauucGCgGCCGGUGAGGgccaGGcCCGCg -3'
miRNA:   3'- gGCGGC--------------UG-CGGCUACUCCag--CU-GGCG- -5'
18286 3' -58.8 NC_004681.1 + 45695 0.7 0.447549
Target:  5'- -gGCCGACGCgGAgGAGGcacCGGCCa- -3'
miRNA:   3'- ggCGGCUGCGgCUaCUCCa--GCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 24927 1.13 0.000478
Target:  5'- gCCGCCGACGCCGAUGAGGUCGACCGCg -3'
miRNA:   3'- -GGCGGCUGCGGCUACUCCAGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.