miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 42551 0.7 0.466066
Target:  5'- gCGCCGACGUgguaGAUGAaguacgGGUCGugcagGCUGCg -3'
miRNA:   3'- gGCGGCUGCGg---CUACU------CCAGC-----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 40075 0.7 0.447549
Target:  5'- -gGCCGA-GCCGGUGA-GUUGACCcgGCg -3'
miRNA:   3'- ggCGGCUgCGGCUACUcCAGCUGG--CG- -5'
18286 3' -58.8 NC_004681.1 + 17490 0.72 0.35365
Target:  5'- gCCGUCcauGAUGuuGAcGAGGuccUCGACCGCg -3'
miRNA:   3'- -GGCGG---CUGCggCUaCUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 19467 0.76 0.200071
Target:  5'- gUCGCCcAgGCCGGUGuGGUCGACC-Cg -3'
miRNA:   3'- -GGCGGcUgCGGCUACuCCAGCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 25319 0.69 0.513994
Target:  5'- gCCGCCGuuGuuGAaGAagcGGUCG-CCGCc -3'
miRNA:   3'- -GGCGGCugCggCUaCU---CCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 41677 0.69 0.494562
Target:  5'- aUCGCCGuGCGCUGccugcGGGGUggcgcugcauggCGGCCGCg -3'
miRNA:   3'- -GGCGGC-UGCGGCua---CUCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 39327 0.7 0.429447
Target:  5'- gCCG-CGGCGCaCGGUGAGcugacaGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCG-GCUACUC------CAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 58535 0.77 0.159376
Target:  5'- aCGUgGGCGCCGGucuUGGcGUCGGCCGCg -3'
miRNA:   3'- gGCGgCUGCGGCU---ACUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45617 0.69 0.494562
Target:  5'- gCCGCCGuCGUCGcccuuguaGUaGGGGUCG-CCGUc -3'
miRNA:   3'- -GGCGGCuGCGGC--------UA-CUCCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 49424 0.83 0.063225
Target:  5'- gCCGCCGugGCggaCGGUGAGGUUgugcaGACCGCc -3'
miRNA:   3'- -GGCGGCugCG---GCUACUCCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 32784 0.7 0.429447
Target:  5'- gCCGCgCGACGUCGgcGGGGUacccgGACCa- -3'
miRNA:   3'- -GGCG-GCUGCGGCuaCUCCAg----CUGGcg -5'
18286 3' -58.8 NC_004681.1 + 41153 0.69 0.475472
Target:  5'- gCGgCGGCGCCGAaGAGGgcCG-UCGCa -3'
miRNA:   3'- gGCgGCUGCGGCUaCUCCa-GCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 29249 0.7 0.420559
Target:  5'- gUCGUugaCGugGCCGuUGAGGUCGcCaCGCc -3'
miRNA:   3'- -GGCG---GCugCGGCuACUCCAGCuG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 14675 0.72 0.361591
Target:  5'- uUGCCGGUGCCGA--AGG-CGACUGCg -3'
miRNA:   3'- gGCGGCUGCGGCUacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 21437 0.73 0.315816
Target:  5'- cCCG-UGACGCCGcUGcGGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCGGCuACuCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 7367 0.75 0.243557
Target:  5'- gCGCacuCGGCGCCGAgGuGGaCGGCCGCg -3'
miRNA:   3'- gGCG---GCUGCGGCUaCuCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 27146 0.69 0.523826
Target:  5'- uCCcUCGACGCCGAccacgGAcucgaaGG-CGACCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa----CU------CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3745 0.69 0.513994
Target:  5'- gCGgCGACGUCGAaggcGAGGgCGGCCuGCu -3'
miRNA:   3'- gGCgGCUGCGGCUa---CUCCaGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 19697 0.69 0.504238
Target:  5'- aCGCCGcagcGCGCCca-GAGcucGUUGACCGCg -3'
miRNA:   3'- gGCGGC----UGCGGcuaCUC---CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8644 0.69 0.494562
Target:  5'- cCCGUCGAa-CCGAaGGGGUucuggccgaUGGCCGCg -3'
miRNA:   3'- -GGCGGCUgcGGCUaCUCCA---------GCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.