miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 35553 0.69 0.484972
Target:  5'- gCGCaCGugGCUuAUGAGGUUGAUaaaGCc -3'
miRNA:   3'- gGCG-GCugCGGcUACUCCAGCUGg--CG- -5'
18286 3' -58.8 NC_004681.1 + 22472 0.69 0.484972
Target:  5'- uCCaCuCGACGUCGggGAGGUCcucGCCGUg -3'
miRNA:   3'- -GGcG-GCUGCGGCuaCUCCAGc--UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 41677 0.69 0.494562
Target:  5'- aUCGCCGuGCGCUGccugcGGGGUggcgcugcauggCGGCCGCg -3'
miRNA:   3'- -GGCGGC-UGCGGCua---CUCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8644 0.69 0.494562
Target:  5'- cCCGUCGAa-CCGAaGGGGUucuggccgaUGGCCGCg -3'
miRNA:   3'- -GGCGGCUgcGGCUaCUCCA---------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 19697 0.69 0.504238
Target:  5'- aCGCCGcagcGCGCCca-GAGcucGUUGACCGCg -3'
miRNA:   3'- gGCGGC----UGCGGcuaCUC---CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 14630 0.69 0.504238
Target:  5'- aUGCCGACcCCGuUGAGGaUCGACUuCa -3'
miRNA:   3'- gGCGGCUGcGGCuACUCC-AGCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 25319 0.69 0.513994
Target:  5'- gCCGCCGuuGuuGAaGAagcGGUCG-CCGCc -3'
miRNA:   3'- -GGCGGCugCggCUaCU---CCAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 26309 0.66 0.686535
Target:  5'- gCCGCCGugGCgGGccAGGaCGuuuCCGUc -3'
miRNA:   3'- -GGCGGCugCGgCUacUCCaGCu--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 36089 0.66 0.676356
Target:  5'- aCGagauCGACGCCGAguugGAgcuggcaaucauGGgcuaCGACCGCa -3'
miRNA:   3'- gGCg---GCUGCGGCUa---CU------------CCa---GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 56814 0.67 0.644609
Target:  5'- -gGCUGACcaucggguguccaGCCGAUGAGcUCG-CCGUa -3'
miRNA:   3'- ggCGGCUG-------------CGGCUACUCcAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8570 0.66 0.666141
Target:  5'- -aGCCG-CaGCCGugccGGGGUCaGCCGCc -3'
miRNA:   3'- ggCGGCuG-CGGCua--CUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 46818 0.67 0.614818
Target:  5'- gCGUCGAUGCCGcgGAaGUUGaaguGCUGCu -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCAGC----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 632 0.67 0.625088
Target:  5'- gUGCC--CGUCGuUGAGGgacucgCGGCCGCg -3'
miRNA:   3'- gGCGGcuGCGGCuACUCCa-----GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 65888 0.66 0.655898
Target:  5'- gCgGCCGAgGCCGA-GAcGGaCGAacuCCGCc -3'
miRNA:   3'- -GgCGGCUgCGGCUaCU-CCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 34011 0.66 0.686535
Target:  5'- gUGcCCGuCGUCGu---GGUCGACUGCg -3'
miRNA:   3'- gGC-GGCuGCGGCuacuCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 2840 0.66 0.696668
Target:  5'- aCCGCCGcuacACGgucaCCGuccccGAGGcgcUCGACCGUg -3'
miRNA:   3'- -GGCGGC----UGC----GGCua---CUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 52377 0.68 0.573944
Target:  5'- cCCGCggcgCGAUGUCGA--GGGUCGgaugaguaACCGCg -3'
miRNA:   3'- -GGCG----GCUGCGGCUacUCCAGC--------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 61443 0.66 0.686535
Target:  5'- -aGCCGACGCCaacaaGUGGGG-CGAugacgacguuCCGUu -3'
miRNA:   3'- ggCGGCUGCGGc----UACUCCaGCU----------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 45117 0.7 0.447549
Target:  5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3'
miRNA:   3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 47106 0.68 0.573944
Target:  5'- gCCGCCGcCGCUGAgcgacGAGaacgccGagGGCCGCg -3'
miRNA:   3'- -GGCGGCuGCGGCUa----CUC------CagCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.