miRNA display CGI


Results 81 - 100 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 59098 0.67 0.625088
Target:  5'- cCCcCCaGACGCUGA--AGGUCuACCGCc -3'
miRNA:   3'- -GGcGG-CUGCGGCUacUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 21306 0.73 0.315091
Target:  5'- cCCGCUGAagaaggcgaccauCGUCG-UGGacguGGUCGACCGCa -3'
miRNA:   3'- -GGCGGCU-------------GCGGCuACU----CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 41069 0.67 0.625088
Target:  5'- gCGCCGcCGCCGAUGuGcUC-ACCGa -3'
miRNA:   3'- gGCGGCuGCGGCUACuCcAGcUGGCg -5'
18286 3' -58.8 NC_004681.1 + 45117 0.7 0.447549
Target:  5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3'
miRNA:   3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 16569 0.66 0.673296
Target:  5'- uUGCCGACGagcgcuacaagcccCCGgcGuccccGGUCGACCuGCa -3'
miRNA:   3'- gGCGGCUGC--------------GGCuaCu----CCAGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 26298 0.66 0.676357
Target:  5'- uCCGaCGugGCCGcacUGcgccGGGUCGAUUGUg -3'
miRNA:   3'- -GGCgGCugCGGCu--AC----UCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 52377 0.68 0.573944
Target:  5'- cCCGCggcgCGAUGUCGA--GGGUCGgaugaguaACCGCg -3'
miRNA:   3'- -GGCG----GCUGCGGCUacUCCAGC--------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 47106 0.68 0.573944
Target:  5'- gCCGCCGcCGCUGAgcgacGAGaacgccGagGGCCGCg -3'
miRNA:   3'- -GGCGGCuGCGGCUa----CUC------CagCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33476 0.68 0.573944
Target:  5'- -gGCCGugGCUGAUccuGGU-GGCCGUc -3'
miRNA:   3'- ggCGGCugCGGCUAcu-CCAgCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45062 0.67 0.635364
Target:  5'- aCGCCGAagcaucCGCCGcggucGAGGcccUCG-CCGCg -3'
miRNA:   3'- gGCGGCU------GCGGCua---CUCC---AGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 61084 0.68 0.557756
Target:  5'- aCCGCCGACcCCGAgcUGcGGUUcacccaaggugggcaGGCCGUc -3'
miRNA:   3'- -GGCGGCUGcGGCU--ACuCCAG---------------CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 37813 0.68 0.543699
Target:  5'- gCUGCCcuGAUgGUCGGUGAGGUUGAUCa- -3'
miRNA:   3'- -GGCGG--CUG-CGGCUACUCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 5662 0.69 0.523827
Target:  5'- uUCGCCGACGac---GAGGUCGugccgauCCGCu -3'
miRNA:   3'- -GGCGGCUGCggcuaCUCCAGCu------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 68889 0.69 0.50521
Target:  5'- gCgGCCGACGCCaucGAGGcgcugaccaucgucaCGGCCGCc -3'
miRNA:   3'- -GgCGGCUGCGGcuaCUCCa--------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 2840 0.66 0.696668
Target:  5'- aCCGCCGcuacACGgucaCCGuccccGAGGcgcUCGACCGUg -3'
miRNA:   3'- -GGCGGC----UGC----GGCua---CUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3588 0.66 0.696668
Target:  5'- gUCGCUGACGgugaacaguCCGGUGAaaucuacgGcGUCGcCCGCg -3'
miRNA:   3'- -GGCGGCUGC---------GGCUACU--------C-CAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 40442 0.68 0.563812
Target:  5'- aCC-UCGGCGCCcuUGAGG-CGGCCGa -3'
miRNA:   3'- -GGcGGCUGCGGcuACUCCaGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 61443 0.66 0.686535
Target:  5'- -aGCCGACGCCaacaaGUGGGG-CGAugacgacguuCCGUu -3'
miRNA:   3'- ggCGGCUGCGGc----UACUCCaGCU----------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 34011 0.66 0.686535
Target:  5'- gUGcCCGuCGUCGu---GGUCGACUGCg -3'
miRNA:   3'- gGC-GGCuGCGGCuacuCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8293 0.66 0.676357
Target:  5'- gCGCgGACGCCGccaaggacggccuGgacaacgacauccccGAGGUCGAgguCCGCa -3'
miRNA:   3'- gGCGgCUGCGGC-------------Ua--------------CUCCAGCU---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.