miRNA display CGI


Results 101 - 120 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 67178 0.66 0.670231
Target:  5'- uCCGUCGcauCGCCaccgagaaggaaggcGAUGAGGcugUCGgcaACCGCa -3'
miRNA:   3'- -GGCGGCu--GCGG---------------CUACUCC---AGC---UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 16569 0.66 0.673296
Target:  5'- uUGCCGACGagcgcuacaagcccCCGgcGuccccGGUCGACCuGCa -3'
miRNA:   3'- gGCGGCUGC--------------GGCuaCu----CCAGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 26298 0.66 0.676357
Target:  5'- uCCGaCGugGCCGcacUGcgccGGGUCGAUUGUg -3'
miRNA:   3'- -GGCgGCugCGGCu--AC----UCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 2840 0.66 0.696668
Target:  5'- aCCGCCGcuacACGgucaCCGuccccGAGGcgcUCGACCGUg -3'
miRNA:   3'- -GGCGGC----UGC----GGCua---CUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8293 0.66 0.676357
Target:  5'- gCGCgGACGCCGccaaggacggccuGgacaacgacauccccGAGGUCGAgguCCGCa -3'
miRNA:   3'- gGCGgCUGCGGC-------------Ua--------------CUCCAGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 61443 0.66 0.686535
Target:  5'- -aGCCGACGCCaacaaGUGGGG-CGAugacgacguuCCGUu -3'
miRNA:   3'- ggCGGCUGCGGc----UACUCCaGCU----------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 41069 0.67 0.625088
Target:  5'- gCGCCGcCGCCGAUGuGcUC-ACCGa -3'
miRNA:   3'- gGCGGCuGCGGCUACuCcAGcUGGCg -5'
18286 3' -58.8 NC_004681.1 + 15912 0.67 0.625088
Target:  5'- aUCGCCGugGCCGc---GGUCaaGACCa- -3'
miRNA:   3'- -GGCGGCugCGGCuacuCCAG--CUGGcg -5'
18286 3' -58.8 NC_004681.1 + 50832 0.67 0.614818
Target:  5'- aCCGCCacccagcuCGCCGAaGAGGUgaagCGccucGCCGCc -3'
miRNA:   3'- -GGCGGcu------GCGGCUaCUCCA----GC----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33476 0.68 0.573944
Target:  5'- -gGCCGugGCUGAUccuGGU-GGCCGUc -3'
miRNA:   3'- ggCGGCugCGGCUAcu-CCAgCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 47106 0.68 0.573944
Target:  5'- gCCGCCGcCGCUGAgcgacGAGaacgccGagGGCCGCg -3'
miRNA:   3'- -GGCGGCuGCGGCUa----CUC------CagCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 52377 0.68 0.573944
Target:  5'- cCCGCggcgCGAUGUCGA--GGGUCGgaugaguaACCGCg -3'
miRNA:   3'- -GGCG----GCUGCGGCUacUCCAGC--------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 38985 0.67 0.594326
Target:  5'- gCGCUggGugGCCGAcGAGGaaggcgucaacgUCGACgGCc -3'
miRNA:   3'- gGCGG--CugCGGCUaCUCC------------AGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 56007 0.67 0.604562
Target:  5'- -aGCgCGACGCCaagGAGGgCGAccuCCGCa -3'
miRNA:   3'- ggCG-GCUGCGGcuaCUCCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 28044 0.67 0.604562
Target:  5'- gCGCUGGCGCUGGcggucGAGGcggUGGCgGCa -3'
miRNA:   3'- gGCGGCUGCGGCUa----CUCCa--GCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 68758 0.67 0.604562
Target:  5'- aCGCC-AgGCCGAaggaguuagaUGAcGGUCGACCa- -3'
miRNA:   3'- gGCGGcUgCGGCU----------ACU-CCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 2022 0.67 0.614818
Target:  5'- gCgGCCagGugGUCGugGAGGgCGGCCGCa -3'
miRNA:   3'- -GgCGG--CugCGGCuaCUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25197 0.67 0.614818
Target:  5'- cCUGgCGGCGCUGGcaacgGcGG-CGACCGCu -3'
miRNA:   3'- -GGCgGCUGCGGCUa----CuCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33345 0.67 0.614818
Target:  5'- cCCGCCcgcacaucACGCUGGcUGAGacCGGCCGCg -3'
miRNA:   3'- -GGCGGc-------UGCGGCU-ACUCcaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 23429 0.67 0.622006
Target:  5'- aCCGUCGACcucgGCCacucccgcaguucuGAUG-GGUCGggcGCCGCc -3'
miRNA:   3'- -GGCGGCUG----CGG--------------CUACuCCAGC---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.