miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 36867 0.66 0.666142
Target:  5'- gCGCuCGGCGuuGAUcAGGUCuAUUGCa -3'
miRNA:   3'- gGCG-GCUGCggCUAcUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 46052 0.66 0.666142
Target:  5'- aCCGUCGAauucuacugGCUGGacaugGAaGUCGGCCGCg -3'
miRNA:   3'- -GGCGGCUg--------CGGCUa----CUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 12555 0.66 0.666141
Target:  5'- aCCGCuCGugGCCG---GGGccUCGACgGUg -3'
miRNA:   3'- -GGCG-GCugCGGCuacUCC--AGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 8570 0.66 0.666141
Target:  5'- -aGCCG-CaGCCGugccGGGGUCaGCCGCc -3'
miRNA:   3'- ggCGGCuG-CGGCua--CUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 27713 0.66 0.655898
Target:  5'- gCCGCCGccaGCGCCaccGAGGgUGACCcagGCg -3'
miRNA:   3'- -GGCGGC---UGCGGcuaCUCCaGCUGG---CG- -5'
18286 3' -58.8 NC_004681.1 + 28020 0.66 0.655898
Target:  5'- uUGCCG-UGCCGccGAGGccccgCGuGCCGCu -3'
miRNA:   3'- gGCGGCuGCGGCuaCUCCa----GC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 65888 0.66 0.655898
Target:  5'- gCgGCCGAgGCCGA-GAcGGaCGAacuCCGCc -3'
miRNA:   3'- -GgCGGCUgCGGCUaCU-CCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 11350 0.67 0.645637
Target:  5'- uCgGCaagGACGuuGAUGAGGcuggCGACCugGCu -3'
miRNA:   3'- -GgCGg--CUGCggCUACUCCa---GCUGG--CG- -5'
18286 3' -58.8 NC_004681.1 + 33051 0.67 0.645636
Target:  5'- uUGCCGAagcacccgcCGCCGAUGAaGUCcuucagcgauGCCGCa -3'
miRNA:   3'- gGCGGCU---------GCGGCUACUcCAGc---------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 56414 0.67 0.645636
Target:  5'- aCGCCuuGGCGCCG-UGGGuGUgcuUGACCGg -3'
miRNA:   3'- gGCGG--CUGCGGCuACUC-CA---GCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 56814 0.67 0.644609
Target:  5'- -gGCUGACcaucggguguccaGCCGAUGAGcUCG-CCGUa -3'
miRNA:   3'- ggCGGCUG-------------CGGCUACUCcAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 12068 0.67 0.635364
Target:  5'- gCCGCauggaCGAgGCCGAguacguggccGAGGUCcGcCCGCg -3'
miRNA:   3'- -GGCG-----GCUgCGGCUa---------CUCCAG-CuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 45062 0.67 0.635364
Target:  5'- aCGCCGAagcaucCGCCGcggucGAGGcccUCG-CCGCg -3'
miRNA:   3'- gGCGGCU------GCGGCua---CUCC---AGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 68280 0.67 0.635363
Target:  5'- -gGCCuuGACGUCGAUGGGGaaGAguUCGCu -3'
miRNA:   3'- ggCGG--CUGCGGCUACUCCagCU--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 51133 0.67 0.635363
Target:  5'- cUCGCCGuCGCCGA--GGG-CGAUgaCGCc -3'
miRNA:   3'- -GGCGGCuGCGGCUacUCCaGCUG--GCG- -5'
18286 3' -58.8 NC_004681.1 + 508 0.67 0.635363
Target:  5'- uCCaCCGGCcaagagacgguGCCGGUGcccuugccccAGGUCuuGACCGCg -3'
miRNA:   3'- -GGcGGCUG-----------CGGCUAC----------UCCAG--CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 42056 0.67 0.635363
Target:  5'- gCGCCGguuaagcagGCGCCauUGAGGUUGGCgucuUGCa -3'
miRNA:   3'- gGCGGC---------UGCGGcuACUCCAGCUG----GCG- -5'
18286 3' -58.8 NC_004681.1 + 632 0.67 0.625088
Target:  5'- gUGCC--CGUCGuUGAGGgacucgCGGCCGCg -3'
miRNA:   3'- gGCGGcuGCGGCuACUCCa-----GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 16716 0.67 0.625088
Target:  5'- cCCGCCGccuccaucGCgGCCugcaguUGcAGGUCGACCGg -3'
miRNA:   3'- -GGCGGC--------UG-CGGcu----AC-UCCAGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 59098 0.67 0.625088
Target:  5'- cCCcCCaGACGCUGA--AGGUCuACCGCc -3'
miRNA:   3'- -GGcGG-CUGCGGCUacUCCAGcUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.