miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 5' -55.2 NC_004681.1 + 51703 0.66 0.806615
Target:  5'- cGGGCG-GGGGAUUcUCCccggggaaccugGUGGuCGUCGGc -3'
miRNA:   3'- -CCCGUaCCCUUAA-AGG------------CACC-GCGGUC- -5'
18286 5' -55.2 NC_004681.1 + 7432 0.66 0.797216
Target:  5'- cGGCGgcgGGGucagccCCG-GGUGCCGGg -3'
miRNA:   3'- cCCGUa--CCCuuaaa-GGCaCCGCGGUC- -5'
18286 5' -55.2 NC_004681.1 + 18347 0.67 0.758072
Target:  5'- cGGGCucGGGuucacccCCgGUGGCGCCAu -3'
miRNA:   3'- -CCCGuaCCCuuaaa--GG-CACCGCGGUc -5'
18286 5' -55.2 NC_004681.1 + 27602 0.67 0.758072
Target:  5'- aGGCGccUGGGucacccUCgGUGGCGCUGGc -3'
miRNA:   3'- cCCGU--ACCCuuaa--AGgCACCGCGGUC- -5'
18286 5' -55.2 NC_004681.1 + 38982 0.67 0.747951
Target:  5'- aGGC-UGGccuucUCCaGUGGCGCCAGc -3'
miRNA:   3'- cCCGuACCcuuaaAGG-CACCGCGGUC- -5'
18286 5' -55.2 NC_004681.1 + 34716 0.67 0.737716
Target:  5'- cGGGCuUGGGAAUUcCCGcgcgcuucGGcCGCCGc -3'
miRNA:   3'- -CCCGuACCCUUAAaGGCa-------CC-GCGGUc -5'
18286 5' -55.2 NC_004681.1 + 26321 0.67 0.735657
Target:  5'- gGGGC--GGGcaucgccgCCGUGGCggGCCAGg -3'
miRNA:   3'- -CCCGuaCCCuuaaa---GGCACCG--CGGUC- -5'
18286 5' -55.2 NC_004681.1 + 18237 0.69 0.643374
Target:  5'- uGGGCGUGGGGAacgggccgaccUgacccggugccuggCCGggGGCGCCGa -3'
miRNA:   3'- -CCCGUACCCUU-----------Aaa------------GGCa-CCGCGGUc -5'
18286 5' -55.2 NC_004681.1 + 25706 0.69 0.642296
Target:  5'- aGGGCAUGGGGccUUCgGUGGgGaCGa -3'
miRNA:   3'- -CCCGUACCCUuaAAGgCACCgCgGUc -5'
18286 5' -55.2 NC_004681.1 + 66654 0.72 0.464558
Target:  5'- uGGGCAUcgGGGggUacCCGaGGgGCCGGg -3'
miRNA:   3'- -CCCGUA--CCCuuAaaGGCaCCgCGGUC- -5'
18286 5' -55.2 NC_004681.1 + 24889 1.1 0.001215
Target:  5'- cGGGCAUGGGAAUUUCCGUGGCGCCAGc -3'
miRNA:   3'- -CCCGUACCCUUAAAGGCACCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.