miRNA: 3'- -CGGGU------GUGGUGaauaC-GUCCAGCCAG- -5'
miRNA: 3'- -CGGG-----UGUGGUGAauACGUCCAgCCAG- -5'
miRNA: 3'- -CGGGUGUGGU-------------GAAuaCGuCCAGCCAg -5'
miRNA: 3'- -CGGGUGUGGUGAAUACGUCCAGCCAG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18288 | 3' | -54.3 | NC_004681.1 | + | 52346 | 0.72 | 0.498106 |
|
Target: 5'- gGCCCAgagaguCGCCACcg--GcCAGGUUGGUCa -3' miRNA: 3'- -CGGGU------GUGGUGaauaC-GUCCAGCCAG- -5' |
|||||||
| 18288 | 3' | -54.3 | NC_004681.1 | + | 63784 | 0.74 | 0.401143 |
|
Target: 5'- aGUCCgcggcGCACCACU--UGCAGGU-GGUCa -3' miRNA: 3'- -CGGG-----UGUGGUGAauACGUCCAgCCAG- -5' |
|||||||
| 18288 | 3' | -54.3 | NC_004681.1 | + | 22795 | 0.78 | 0.222153 |
|
Target: 5'- uGCCCACACCAgggggcgccacucCUUggGCuGGUCGGUg -3' miRNA: 3'- -CGGGUGUGGU-------------GAAuaCGuCCAGCCAg -5' |
|||||||
| 18288 | 3' | -54.3 | NC_004681.1 | + | 26441 | 1.12 | 0.001054 |
|
Target: 5'- uGCCCACACCACUUAUGCAGGUCGGUCa -3' miRNA: 3'- -CGGGUGUGGUGAAUACGUCCAGCCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home