miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18288 5' -59.8 NC_004681.1 + 11093 0.66 0.575385
Target:  5'- cGCgAAUCGACuuGGCGUAGU-CGcCCGg -3'
miRNA:   3'- -UG-UUAGCUGggCCGCGUCAcGCcGGU- -5'
18288 5' -59.8 NC_004681.1 + 40570 0.66 0.575385
Target:  5'- gGCGgcGUCGGCCgCGGCGUucaauGUcauCGGCCGc -3'
miRNA:   3'- -UGU--UAGCUGG-GCCGCGu----CAc--GCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 61355 0.66 0.575385
Target:  5'- -aGAUCGGCCCGucGCuGCGGUG-GGCa- -3'
miRNA:   3'- ugUUAGCUGGGC--CG-CGUCACgCCGgu -5'
18288 5' -59.8 NC_004681.1 + 3399 0.66 0.575385
Target:  5'- -aAGUUGGCCgCGGCGCccgcGCGaGCCAc -3'
miRNA:   3'- ugUUAGCUGG-GCCGCGuca-CGC-CGGU- -5'
18288 5' -59.8 NC_004681.1 + 28031 0.66 0.575385
Target:  5'- aGCAAgaccgaCGGCgCUGGCGCuG-GCGGUCGa -3'
miRNA:   3'- -UGUUa-----GCUG-GGCCGCGuCaCGCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 67368 0.66 0.554709
Target:  5'- cACGA-CGgagaACUCGGCGUugcGGUGCGGCgGg -3'
miRNA:   3'- -UGUUaGC----UGGGCCGCG---UCACGCCGgU- -5'
18288 5' -59.8 NC_004681.1 + 33409 0.66 0.554709
Target:  5'- gGCGAaCGuCCCGGCGUAcaccGCGGCgCGa -3'
miRNA:   3'- -UGUUaGCuGGGCCGCGUca--CGCCG-GU- -5'
18288 5' -59.8 NC_004681.1 + 20091 0.66 0.544452
Target:  5'- aGCAAUgGACCCGGCGC----CGaGCCc -3'
miRNA:   3'- -UGUUAgCUGGGCCGCGucacGC-CGGu -5'
18288 5' -59.8 NC_004681.1 + 39937 0.66 0.534257
Target:  5'- cGCGcgCGGgCgCGGUgcgcGCGGUGCGGuCCAc -3'
miRNA:   3'- -UGUuaGCUgG-GCCG----CGUCACGCC-GGU- -5'
18288 5' -59.8 NC_004681.1 + 40063 0.66 0.534257
Target:  5'- -gAGUUGACCCGGCGCcgacGCGcGCgGa -3'
miRNA:   3'- ugUUAGCUGGGCCGCGuca-CGC-CGgU- -5'
18288 5' -59.8 NC_004681.1 + 8468 0.67 0.514078
Target:  5'- gGCGGcUGAcCCCGGCaCGGcUGCGGCUg -3'
miRNA:   3'- -UGUUaGCU-GGGCCGcGUC-ACGCCGGu -5'
18288 5' -59.8 NC_004681.1 + 69222 0.67 0.504105
Target:  5'- gGCGAgggaGGCCagGGCGCGGgcgagGCGGCg- -3'
miRNA:   3'- -UGUUag--CUGGg-CCGCGUCa----CGCCGgu -5'
18288 5' -59.8 NC_004681.1 + 64359 0.67 0.504105
Target:  5'- ---cUCGAauucCUCGGCGguGUGCGGUUc -3'
miRNA:   3'- uguuAGCU----GGGCCGCguCACGCCGGu -5'
18288 5' -59.8 NC_004681.1 + 40433 0.67 0.494217
Target:  5'- cGCuguUgGACCuCGGCGCccuugAG-GCGGCCGa -3'
miRNA:   3'- -UGuu-AgCUGG-GCCGCG-----UCaCGCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 65914 0.68 0.455603
Target:  5'- -aAGUCGACCgacuuguaCGGgGUGGgGCGGCCGa -3'
miRNA:   3'- ugUUAGCUGG--------GCCgCGUCaCGCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 7375 0.68 0.455603
Target:  5'- cGCAGgcggCGcACUCGGCGCcgaGGUGgaCGGCCGc -3'
miRNA:   3'- -UGUUa---GC-UGGGCCGCG---UCAC--GCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 3507 0.69 0.392202
Target:  5'- cGCGcgUGGCUC-GCGCGGgcgccGCGGCCAa -3'
miRNA:   3'- -UGUuaGCUGGGcCGCGUCa----CGCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 22065 0.69 0.383623
Target:  5'- gGCGAU-GGCaaGGCGCAGgaauccccUGUGGCCAa -3'
miRNA:   3'- -UGUUAgCUGggCCGCGUC--------ACGCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 4188 0.69 0.358645
Target:  5'- cACGAgaggaagCGACCCaGCGCGggguuggcGUGgGGCCAg -3'
miRNA:   3'- -UGUUa------GCUGGGcCGCGU--------CACgCCGGU- -5'
18288 5' -59.8 NC_004681.1 + 22907 0.69 0.358645
Target:  5'- -gGGUCGcCCCGGCgaugccGUAGUaGCGGCCc -3'
miRNA:   3'- ugUUAGCuGGGCCG------CGUCA-CGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.