Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18288 | 5' | -59.8 | NC_004681.1 | + | 69222 | 0.67 | 0.504105 |
Target: 5'- gGCGAgggaGGCCagGGCGCGGgcgagGCGGCg- -3' miRNA: 3'- -UGUUag--CUGGg-CCGCGUCa----CGCCGgu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 67368 | 0.66 | 0.554709 |
Target: 5'- cACGA-CGgagaACUCGGCGUugcGGUGCGGCgGg -3' miRNA: 3'- -UGUUaGC----UGGGCCGCG---UCACGCCGgU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 65914 | 0.68 | 0.455603 |
Target: 5'- -aAGUCGACCgacuuguaCGGgGUGGgGCGGCCGa -3' miRNA: 3'- ugUUAGCUGG--------GCCgCGUCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 64359 | 0.67 | 0.504105 |
Target: 5'- ---cUCGAauucCUCGGCGguGUGCGGUUc -3' miRNA: 3'- uguuAGCU----GGGCCGCguCACGCCGGu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 61355 | 0.66 | 0.575385 |
Target: 5'- -aGAUCGGCCCGucGCuGCGGUG-GGCa- -3' miRNA: 3'- ugUUAGCUGGGC--CG-CGUCACgCCGgu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 58761 | 0.79 | 0.08823 |
Target: 5'- gGCAGgugUGGCCCgcGGCGCAG-GCGGCCGu -3' miRNA: 3'- -UGUUa--GCUGGG--CCGCGUCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 40570 | 0.66 | 0.575385 |
Target: 5'- gGCGgcGUCGGCCgCGGCGUucaauGUcauCGGCCGc -3' miRNA: 3'- -UGU--UAGCUGG-GCCGCGu----CAc--GCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 40433 | 0.67 | 0.494217 |
Target: 5'- cGCuguUgGACCuCGGCGCccuugAG-GCGGCCGa -3' miRNA: 3'- -UGuu-AgCUGG-GCCGCG-----UCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 40063 | 0.66 | 0.534257 |
Target: 5'- -gAGUUGACCCGGCGCcgacGCGcGCgGa -3' miRNA: 3'- ugUUAGCUGGGCCGCGuca-CGC-CGgU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 39937 | 0.66 | 0.534257 |
Target: 5'- cGCGcgCGGgCgCGGUgcgcGCGGUGCGGuCCAc -3' miRNA: 3'- -UGUuaGCUgG-GCCG----CGUCACGCC-GGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 39211 | 0.72 | 0.263937 |
Target: 5'- gGCGGUCGcggaagguguuGCCC-GCGCAG-GUGGCCAc -3' miRNA: 3'- -UGUUAGC-----------UGGGcCGCGUCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 33409 | 0.66 | 0.554709 |
Target: 5'- gGCGAaCGuCCCGGCGUAcaccGCGGCgCGa -3' miRNA: 3'- -UGUUaGCuGGGCCGCGUca--CGCCG-GU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 28031 | 0.66 | 0.575385 |
Target: 5'- aGCAAgaccgaCGGCgCUGGCGCuG-GCGGUCGa -3' miRNA: 3'- -UGUUa-----GCUG-GGCCGCGuCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 26406 | 1.07 | 0.0007 |
Target: 5'- cACAAUCGACCCGGCGCAGUGCGGCCAc -3' miRNA: 3'- -UGUUAGCUGGGCCGCGUCACGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 24825 | 0.82 | 0.046638 |
Target: 5'- cGCGGUCGACCucaucggcgucggCGGCGCGGgcgGCGGCCGc -3' miRNA: 3'- -UGUUAGCUGG-------------GCCGCGUCa--CGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 22907 | 0.69 | 0.358645 |
Target: 5'- -gGGUCGcCCCGGCgaugccGUAGUaGCGGCCc -3' miRNA: 3'- ugUUAGCuGGGCCG------CGUCA-CGCCGGu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 22065 | 0.69 | 0.383623 |
Target: 5'- gGCGAU-GGCaaGGCGCAGgaauccccUGUGGCCAa -3' miRNA: 3'- -UGUUAgCUGggCCGCGUC--------ACGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 20091 | 0.66 | 0.544452 |
Target: 5'- aGCAAUgGACCCGGCGC----CGaGCCc -3' miRNA: 3'- -UGUUAgCUGGGCCGCGucacGC-CGGu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 16132 | 0.71 | 0.304903 |
Target: 5'- gGguAUCGGCUucgCGGCGCuG-GCGGCCAu -3' miRNA: 3'- -UguUAGCUGG---GCCGCGuCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 12250 | 0.7 | 0.342636 |
Target: 5'- uCGggUGGCCCGGUGC--UGUGGCCGa -3' miRNA: 3'- uGUuaGCUGGGCCGCGucACGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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