Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18288 | 5' | -59.8 | NC_004681.1 | + | 24825 | 0.82 | 0.046638 |
Target: 5'- cGCGGUCGACCucaucggcgucggCGGCGCGGgcgGCGGCCGc -3' miRNA: 3'- -UGUUAGCUGG-------------GCCGCGUCa--CGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 61355 | 0.66 | 0.575385 |
Target: 5'- -aGAUCGGCCCGucGCuGCGGUG-GGCa- -3' miRNA: 3'- ugUUAGCUGGGC--CG-CGUCACgCCGgu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 28031 | 0.66 | 0.575385 |
Target: 5'- aGCAAgaccgaCGGCgCUGGCGCuG-GCGGUCGa -3' miRNA: 3'- -UGUUa-----GCUG-GGCCGCGuCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 3399 | 0.66 | 0.575385 |
Target: 5'- -aAGUUGGCCgCGGCGCccgcGCGaGCCAc -3' miRNA: 3'- ugUUAGCUGG-GCCGCGuca-CGC-CGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 20091 | 0.66 | 0.544452 |
Target: 5'- aGCAAUgGACCCGGCGC----CGaGCCc -3' miRNA: 3'- -UGUUAgCUGGGCCGCGucacGC-CGGu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 8468 | 0.67 | 0.514078 |
Target: 5'- gGCGGcUGAcCCCGGCaCGGcUGCGGCUg -3' miRNA: 3'- -UGUUaGCU-GGGCCGcGUC-ACGCCGGu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 40433 | 0.67 | 0.494217 |
Target: 5'- cGCuguUgGACCuCGGCGCccuugAG-GCGGCCGa -3' miRNA: 3'- -UGuu-AgCUGG-GCCGCG-----UCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 22065 | 0.69 | 0.383623 |
Target: 5'- gGCGAU-GGCaaGGCGCAGgaauccccUGUGGCCAa -3' miRNA: 3'- -UGUUAgCUGggCCGCGUC--------ACGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 12250 | 0.7 | 0.342636 |
Target: 5'- uCGggUGGCCCGGUGC--UGUGGCCGa -3' miRNA: 3'- uGUuaGCUGGGCCGCGucACGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 16132 | 0.71 | 0.304903 |
Target: 5'- gGguAUCGGCUucgCGGCGCuG-GCGGCCAu -3' miRNA: 3'- -UguUAGCUGG---GCCGCGuCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 69222 | 0.67 | 0.504105 |
Target: 5'- gGCGAgggaGGCCagGGCGCGGgcgagGCGGCg- -3' miRNA: 3'- -UGUUag--CUGGg-CCGCGUCa----CGCCGgu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 64359 | 0.67 | 0.504105 |
Target: 5'- ---cUCGAauucCUCGGCGguGUGCGGUUc -3' miRNA: 3'- uguuAGCU----GGGCCGCguCACGCCGGu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 7375 | 0.68 | 0.455603 |
Target: 5'- cGCAGgcggCGcACUCGGCGCcgaGGUGgaCGGCCGc -3' miRNA: 3'- -UGUUa---GC-UGGGCCGCG---UCAC--GCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 65914 | 0.68 | 0.455603 |
Target: 5'- -aAGUCGACCgacuuguaCGGgGUGGgGCGGCCGa -3' miRNA: 3'- ugUUAGCUGG--------GCCgCGUCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 3507 | 0.69 | 0.392202 |
Target: 5'- cGCGcgUGGCUC-GCGCGGgcgccGCGGCCAa -3' miRNA: 3'- -UGUuaGCUGGGcCGCGUCa----CGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 4188 | 0.69 | 0.358645 |
Target: 5'- cACGAgaggaagCGACCCaGCGCGggguuggcGUGgGGCCAg -3' miRNA: 3'- -UGUUa------GCUGGGcCGCGU--------CACgCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 22907 | 0.69 | 0.358645 |
Target: 5'- -gGGUCGcCCCGGCgaugccGUAGUaGCGGCCc -3' miRNA: 3'- ugUUAGCuGGGCCG------CGUCA-CGCCGGu -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 39211 | 0.72 | 0.263937 |
Target: 5'- gGCGGUCGcggaagguguuGCCC-GCGCAG-GUGGCCAc -3' miRNA: 3'- -UGUUAGC-----------UGGGcCGCGUCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 58761 | 0.79 | 0.08823 |
Target: 5'- gGCAGgugUGGCCCgcGGCGCAG-GCGGCCGu -3' miRNA: 3'- -UGUUa--GCUGGG--CCGCGUCaCGCCGGU- -5' |
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18288 | 5' | -59.8 | NC_004681.1 | + | 11093 | 0.66 | 0.575385 |
Target: 5'- cGCgAAUCGACuuGGCGUAGU-CGcCCGg -3' miRNA: 3'- -UG-UUAGCUGggCCGCGUCAcGCcGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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