miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18289 3' -56.1 NC_004681.1 + 38142 0.66 0.787992
Target:  5'- -aGCCC-CGAggCCGG-AUGGCCCUc- -3'
miRNA:   3'- ggUGGGuGCUa-GGCCgUACUGGGAag -5'
18289 3' -56.1 NC_004681.1 + 48684 0.66 0.768671
Target:  5'- gCCugCCucuGCGAg--GGCGUGGCCCa-- -3'
miRNA:   3'- -GGugGG---UGCUaggCCGUACUGGGaag -5'
18289 3' -56.1 NC_004681.1 + 20520 0.66 0.768671
Target:  5'- uCCACgCACGccUCCGcGCA-GACCCg-- -3'
miRNA:   3'- -GGUGgGUGCu-AGGC-CGUaCUGGGaag -5'
18289 3' -56.1 NC_004681.1 + 12101 0.66 0.758808
Target:  5'- uCCGCCCGCGcGUCUcGC-UGACCaaggUCg -3'
miRNA:   3'- -GGUGGGUGC-UAGGcCGuACUGGga--AG- -5'
18289 3' -56.1 NC_004681.1 + 31784 0.66 0.748824
Target:  5'- ---aCCGCGcgCUGGCAcugcUGACCCUc- -3'
miRNA:   3'- ggugGGUGCuaGGCCGU----ACUGGGAag -5'
18289 3' -56.1 NC_004681.1 + 63195 0.67 0.738729
Target:  5'- --gUCCACGAUCCGGCAcaGCUCa-- -3'
miRNA:   3'- gguGGGUGCUAGGCCGUacUGGGaag -5'
18289 3' -56.1 NC_004681.1 + 17201 0.67 0.738729
Target:  5'- gCGCCCGCGAucuUCUGGCccaucUGAgCCCa-- -3'
miRNA:   3'- gGUGGGUGCU---AGGCCGu----ACU-GGGaag -5'
18289 3' -56.1 NC_004681.1 + 28512 0.67 0.738729
Target:  5'- uCCAucUCCGCGGgagCCGGgGUGACCg--- -3'
miRNA:   3'- -GGU--GGGUGCUa--GGCCgUACUGGgaag -5'
18289 3' -56.1 NC_004681.1 + 30673 0.67 0.728534
Target:  5'- aCCGCCUugGcgcuugcgCCGGUaggacucggugGUGGCaCCUUCg -3'
miRNA:   3'- -GGUGGGugCua------GGCCG-----------UACUG-GGAAG- -5'
18289 3' -56.1 NC_004681.1 + 44127 0.67 0.728534
Target:  5'- cUCACCCcCGAggccgCgGGCcUGGCCCUc- -3'
miRNA:   3'- -GGUGGGuGCUa----GgCCGuACUGGGAag -5'
18289 3' -56.1 NC_004681.1 + 51953 0.67 0.728534
Target:  5'- gCCugCCGCGAggagUCGGC-UGAacaCUUCg -3'
miRNA:   3'- -GGugGGUGCUa---GGCCGuACUgg-GAAG- -5'
18289 3' -56.1 NC_004681.1 + 66263 0.67 0.718249
Target:  5'- -uGCCCGCGGUggUGGCGUGAUaCUUCu -3'
miRNA:   3'- ggUGGGUGCUAg-GCCGUACUGgGAAG- -5'
18289 3' -56.1 NC_004681.1 + 32527 0.67 0.697449
Target:  5'- -uGCCCACGAugugcUCCGccugcGCGgugGugCCUUCg -3'
miRNA:   3'- ggUGGGUGCU-----AGGC-----CGUa--CugGGAAG- -5'
18289 3' -56.1 NC_004681.1 + 52125 0.67 0.686955
Target:  5'- aCCACCUugGGcuugcgcacCCGGCAgcgggaGACCaCUUCc -3'
miRNA:   3'- -GGUGGGugCUa--------GGCCGUa-----CUGG-GAAG- -5'
18289 3' -56.1 NC_004681.1 + 30104 0.68 0.675356
Target:  5'- aCAaCCACGGcuucgguUCCGGCAUGAUCUa-- -3'
miRNA:   3'- gGUgGGUGCU-------AGGCCGUACUGGGaag -5'
18289 3' -56.1 NC_004681.1 + 20110 0.68 0.66583
Target:  5'- -aGCCCACGAUCaCGuUcgGACCCcUCc -3'
miRNA:   3'- ggUGGGUGCUAG-GCcGuaCUGGGaAG- -5'
18289 3' -56.1 NC_004681.1 + 60651 0.68 0.66583
Target:  5'- gCgGCCCgagGCG-UgCGGCGUGAcuaCCCUUCg -3'
miRNA:   3'- -GgUGGG---UGCuAgGCCGUACU---GGGAAG- -5'
18289 3' -56.1 NC_004681.1 + 22498 0.68 0.655218
Target:  5'- gCCGUCCGCGG-CCGGgGUGACCagcgUCc -3'
miRNA:   3'- -GGUGGGUGCUaGGCCgUACUGGga--AG- -5'
18289 3' -56.1 NC_004681.1 + 9370 0.68 0.644587
Target:  5'- gCCGCCCAUGuaCUGGCcauUGGCguCCUUCg -3'
miRNA:   3'- -GGUGGGUGCuaGGCCGu--ACUG--GGAAG- -5'
18289 3' -56.1 NC_004681.1 + 53949 0.69 0.602043
Target:  5'- gCCACCCcccaGUCC-GCAUGGCCCUcCa -3'
miRNA:   3'- -GGUGGGugc-UAGGcCGUACUGGGAaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.