Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18289 | 3' | -56.1 | NC_004681.1 | + | 51953 | 0.67 | 0.728534 |
Target: 5'- gCCugCCGCGAggagUCGGC-UGAacaCUUCg -3' miRNA: 3'- -GGugGGUGCUa---GGCCGuACUgg-GAAG- -5' |
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18289 | 3' | -56.1 | NC_004681.1 | + | 52125 | 0.67 | 0.686955 |
Target: 5'- aCCACCUugGGcuugcgcacCCGGCAgcgggaGACCaCUUCc -3' miRNA: 3'- -GGUGGGugCUa--------GGCCGUa-----CUGG-GAAG- -5' |
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18289 | 3' | -56.1 | NC_004681.1 | + | 53949 | 0.69 | 0.602043 |
Target: 5'- gCCACCCcccaGUCC-GCAUGGCCCUcCa -3' miRNA: 3'- -GGUGGGugc-UAGGcCGUACUGGGAaG- -5' |
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18289 | 3' | -56.1 | NC_004681.1 | + | 57409 | 0.76 | 0.251437 |
Target: 5'- gCGCuCCGCGAUgCUGGCGUcACCCUUCc -3' miRNA: 3'- gGUG-GGUGCUA-GGCCGUAcUGGGAAG- -5' |
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18289 | 3' | -56.1 | NC_004681.1 | + | 60651 | 0.68 | 0.66583 |
Target: 5'- gCgGCCCgagGCG-UgCGGCGUGAcuaCCCUUCg -3' miRNA: 3'- -GgUGGG---UGCuAgGCCGUACU---GGGAAG- -5' |
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18289 | 3' | -56.1 | NC_004681.1 | + | 63195 | 0.67 | 0.738729 |
Target: 5'- --gUCCACGAUCCGGCAcaGCUCa-- -3' miRNA: 3'- gguGGGUGCUAGGCCGUacUGGGaag -5' |
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18289 | 3' | -56.1 | NC_004681.1 | + | 66263 | 0.67 | 0.718249 |
Target: 5'- -uGCCCGCGGUggUGGCGUGAUaCUUCu -3' miRNA: 3'- ggUGGGUGCUAg-GCCGUACUGgGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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