miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18289 3' -56.1 NC_004681.1 + 22498 0.68 0.655218
Target:  5'- gCCGUCCGCGG-CCGGgGUGACCagcgUCc -3'
miRNA:   3'- -GGUGGGUGCUaGGCCgUACUGGga--AG- -5'
18289 3' -56.1 NC_004681.1 + 9370 0.68 0.644587
Target:  5'- gCCGCCCAUGuaCUGGCcauUGGCguCCUUCg -3'
miRNA:   3'- -GGUGGGUGCuaGGCCGu--ACUG--GGAAG- -5'
18289 3' -56.1 NC_004681.1 + 53949 0.69 0.602043
Target:  5'- gCCACCCcccaGUCC-GCAUGGCCCUcCa -3'
miRNA:   3'- -GGUGGGugc-UAGGcCGUACUGGGAaG- -5'
18289 3' -56.1 NC_004681.1 + 1528 0.7 0.528799
Target:  5'- cCCGCCCGCGGcgCCaauGGCcguguauucGUGGCCCaUCa -3'
miRNA:   3'- -GGUGGGUGCUa-GG---CCG---------UACUGGGaAG- -5'
18289 3' -56.1 NC_004681.1 + 50404 0.71 0.478536
Target:  5'- -uGCCCAUGAguucagcgUCGGCcgcggggacGUGGCCCUUCu -3'
miRNA:   3'- ggUGGGUGCUa-------GGCCG---------UACUGGGAAG- -5'
18289 3' -56.1 NC_004681.1 + 26603 1.1 0.001087
Target:  5'- cCCACCCACGAUCCGGCAUGACCCUUCc -3'
miRNA:   3'- -GGUGGGUGCUAGGCCGUACUGGGAAG- -5'
18289 3' -56.1 NC_004681.1 + 38142 0.66 0.787992
Target:  5'- -aGCCC-CGAggCCGG-AUGGCCCUc- -3'
miRNA:   3'- ggUGGGuGCUa-GGCCgUACUGGGAag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.