miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18289 5' -58.1 NC_004681.1 + 60550 0.66 0.653328
Target:  5'- gUAGUCacGCCGcacGCCucGGGCCGcUGGCCg -3'
miRNA:   3'- -AUCAGcaUGGUc--CGG--UCCGGC-AUCGG- -5'
18289 5' -58.1 NC_004681.1 + 25300 0.66 0.642687
Target:  5'- cGGUCGccGCCGuuGCCAGcGCCGccaggGGCCu -3'
miRNA:   3'- aUCAGCa-UGGUc-CGGUC-CGGCa----UCGG- -5'
18289 5' -58.1 NC_004681.1 + 33314 0.66 0.625645
Target:  5'- -uGUCGUugcuuagcGCCuugaacauguucacGGCCAGGCCG-AGCa -3'
miRNA:   3'- auCAGCA--------UGGu-------------CCGGUCCGGCaUCGg -5'
18289 5' -58.1 NC_004681.1 + 49887 0.66 0.621385
Target:  5'- cAGcCGUGgCAGcCCuuGGuGCCGUGGCCg -3'
miRNA:   3'- aUCaGCAUgGUCcGG--UC-CGGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 4230 0.66 0.610743
Target:  5'- gGGUUGUugCGGGCCucagcGGCCu--GCUu -3'
miRNA:   3'- aUCAGCAugGUCCGGu----CCGGcauCGG- -5'
18289 5' -58.1 NC_004681.1 + 12247 0.66 0.600119
Target:  5'- gAGUCGggu--GGcCCGGuGCUGUGGCCg -3'
miRNA:   3'- aUCAGCaugguCC-GGUC-CGGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 13094 0.66 0.600119
Target:  5'- -cGUCGUcCgCGGuGCCAGcGgUGUAGCCg -3'
miRNA:   3'- auCAGCAuG-GUC-CGGUC-CgGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 10314 0.67 0.58952
Target:  5'- ---cCGgggaGCCAgGGCCAGG-UGUGGCCg -3'
miRNA:   3'- aucaGCa---UGGU-CCGGUCCgGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 18457 0.67 0.58952
Target:  5'- aGGUCGccaACCGGGCCAugaaguuCgGUGGCCa -3'
miRNA:   3'- aUCAGCa--UGGUCCGGUcc-----GgCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 32346 0.67 0.567381
Target:  5'- gAGuUCGU-CCGGGCUagacacgAGGCCGcgcuGCCg -3'
miRNA:   3'- aUC-AGCAuGGUCCGG-------UCCGGCau--CGG- -5'
18289 5' -58.1 NC_004681.1 + 24203 0.67 0.537178
Target:  5'- aAGgCGUccGCCAGGCUGGcGCCGgaaccuugcUGGCCc -3'
miRNA:   3'- aUCaGCA--UGGUCCGGUC-CGGC---------AUCGG- -5'
18289 5' -58.1 NC_004681.1 + 52978 0.67 0.536145
Target:  5'- -uGUCGccgcgGCuCGGGCacgcgggCAGGCCGaUGGCCa -3'
miRNA:   3'- auCAGCa----UG-GUCCG-------GUCCGGC-AUCGG- -5'
18289 5' -58.1 NC_004681.1 + 44243 0.68 0.516674
Target:  5'- --uUCGcgGCCggugaGGGCCAGGCcCGcGGCCu -3'
miRNA:   3'- aucAGCa-UGG-----UCCGGUCCG-GCaUCGG- -5'
18289 5' -58.1 NC_004681.1 + 60147 0.68 0.516674
Target:  5'- cGGUCa-GCCGGuGCCAGGUgCGggAGCCg -3'
miRNA:   3'- aUCAGcaUGGUC-CGGUCCG-GCa-UCGG- -5'
18289 5' -58.1 NC_004681.1 + 65060 0.68 0.513625
Target:  5'- gUAGUCGUGcggguaguagacguCCAGcuCCAGGCgCGUcGCCa -3'
miRNA:   3'- -AUCAGCAU--------------GGUCc-GGUCCG-GCAuCGG- -5'
18289 5' -58.1 NC_004681.1 + 32934 0.68 0.50654
Target:  5'- ---aCGUGCCAGGCguGG-CGUugaugAGCCu -3'
miRNA:   3'- aucaGCAUGGUCCGguCCgGCA-----UCGG- -5'
18289 5' -58.1 NC_004681.1 + 24464 0.68 0.486534
Target:  5'- ---aCGUAgaacgcggUCAGGCCcacGGuGCCGUAGCCa -3'
miRNA:   3'- aucaGCAU--------GGUCCGG---UC-CGGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 53277 0.69 0.46594
Target:  5'- gUAGUCGU-CCAaugucgcGGCCaugAGGaaguCCGUGGCCg -3'
miRNA:   3'- -AUCAGCAuGGU-------CCGG---UCC----GGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 36759 0.69 0.46594
Target:  5'- cAGgauUACCAGcgcgucuGCCAGGCCGcUGGCCc -3'
miRNA:   3'- aUCagcAUGGUC-------CGGUCCGGC-AUCGG- -5'
18289 5' -58.1 NC_004681.1 + 18375 0.69 0.428944
Target:  5'- --aUCGacaUGgCAGGCCAGGCgGcGGCCg -3'
miRNA:   3'- aucAGC---AUgGUCCGGUCCGgCaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.