Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 18289 | 5' | -58.1 | NC_004681.1 | + | 52314 | 0.7 | 0.419739 |
|
Target: 5'- aGGUCGgggauGGCgGGGCCGUucuuGGCCg -3' miRNA: 3'- aUCAGCaugguCCGgUCCGGCA----UCGG- -5' |
|||||||
| 18289 | 5' | -58.1 | NC_004681.1 | + | 16326 | 0.71 | 0.333867 |
|
Target: 5'- gGGUCGUugggauuuccGCCgaAGGCguGGCCGUucugcuuGGCCu -3' miRNA: 3'- aUCAGCA----------UGG--UCCGguCCGGCA-------UCGG- -5' |
|||||||
| 18289 | 5' | -58.1 | NC_004681.1 | + | 30922 | 0.71 | 0.334651 |
|
Target: 5'- gGGUCcggGCaggUAGGcCCAGGCCGUGGCg -3' miRNA: 3'- aUCAGca-UG---GUCC-GGUCCGGCAUCGg -5' |
|||||||
| 18289 | 5' | -58.1 | NC_004681.1 | + | 12928 | 0.72 | 0.304332 |
|
Target: 5'- cUGGaCGUACCGGcGCCAauGGCCGUAcguGCUg -3' miRNA: 3'- -AUCaGCAUGGUC-CGGU--CCGGCAU---CGG- -5' |
|||||||
| 18289 | 5' | -58.1 | NC_004681.1 | + | 33459 | 0.87 | 0.02799 |
|
Target: 5'- -cGUCGUugCGGGCCAguGGCCGUGGCUg -3' miRNA: 3'- auCAGCAugGUCCGGU--CCGGCAUCGG- -5' |
|||||||
| 18289 | 5' | -58.1 | NC_004681.1 | + | 26568 | 1.11 | 0.000553 |
|
Target: 5'- aUAGUCGUACCAGGCCAGGCCGUAGCCg -3' miRNA: 3'- -AUCAGCAUGGUCCGGUCCGGCAUCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home