miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18289 5' -58.1 NC_004681.1 + 60550 0.66 0.653328
Target:  5'- gUAGUCacGCCGcacGCCucGGGCCGcUGGCCg -3'
miRNA:   3'- -AUCAGcaUGGUc--CGG--UCCGGC-AUCGG- -5'
18289 5' -58.1 NC_004681.1 + 13094 0.66 0.600119
Target:  5'- -cGUCGUcCgCGGuGCCAGcGgUGUAGCCg -3'
miRNA:   3'- auCAGCAuG-GUC-CGGUC-CgGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 4230 0.66 0.610743
Target:  5'- gGGUUGUugCGGGCCucagcGGCCu--GCUu -3'
miRNA:   3'- aUCAGCAugGUCCGGu----CCGGcauCGG- -5'
18289 5' -58.1 NC_004681.1 + 49887 0.66 0.621385
Target:  5'- cAGcCGUGgCAGcCCuuGGuGCCGUGGCCg -3'
miRNA:   3'- aUCaGCAUgGUCcGG--UC-CGGCAUCGG- -5'
18289 5' -58.1 NC_004681.1 + 33314 0.66 0.625645
Target:  5'- -uGUCGUugcuuagcGCCuugaacauguucacGGCCAGGCCG-AGCa -3'
miRNA:   3'- auCAGCA--------UGGu-------------CCGGUCCGGCaUCGg -5'
18289 5' -58.1 NC_004681.1 + 25300 0.66 0.642687
Target:  5'- cGGUCGccGCCGuuGCCAGcGCCGccaggGGCCu -3'
miRNA:   3'- aUCAGCa-UGGUc-CGGUC-CGGCa----UCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.