Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 50930 | 0.69 | 0.368484 |
|
Target: 5'- -cUCUUCGgCGagcUGGGUGGCGGUGg -3' miRNA: 3'- acAGGAGCgGCgguAUCCACCGCCAC- -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 30676 | 0.7 | 0.360265 |
|
Target: 5'- gGUCaagCUCGCCuuccaucacgGCCcu-GGUGGCGGUGc -3' miRNA: 3'- aCAG---GAGCGG----------CGGuauCCACCGCCAC- -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 65612 | 0.7 | 0.360265 |
|
Target: 5'- cUG-CUUCGCCGCCAagUGGcGUGGCGa-- -3' miRNA: 3'- -ACaGGAGCGGCGGU--AUC-CACCGCcac -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 57805 | 0.7 | 0.360265 |
|
Target: 5'- cG-CCgCGCCGCCG-AGGUGGCGa-- -3' miRNA: 3'- aCaGGaGCGGCGGUaUCCACCGCcac -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 47174 | 0.7 | 0.321119 |
|
Target: 5'- --aCCUCGaCGCCAagguGGUGGCGGg- -3' miRNA: 3'- acaGGAGCgGCGGUau--CCACCGCCac -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 19501 | 0.7 | 0.321119 |
|
Target: 5'- cGUCCUCGUCGCCcguGUAGGUcuGGauGUa -3' miRNA: 3'- aCAGGAGCGGCGG---UAUCCA--CCgcCAc -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 25925 | 0.75 | 0.155756 |
|
Target: 5'- cGUCCUgGaUUGCCAUGagcaccgcGGUGGCGGUGa -3' miRNA: 3'- aCAGGAgC-GGCGGUAU--------CCACCGCCAC- -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 44835 | 0.78 | 0.09899 |
|
Target: 5'- aGUCCUCGacgucgaaggCGCCGcAGGUGGUGGUGa -3' miRNA: 3'- aCAGGAGCg---------GCGGUaUCCACCGCCAC- -5' |
|||||||
| 18290 | 3' | -59.7 | NC_004681.1 | + | 26972 | 1.09 | 0.000563 |
|
Target: 5'- aUGUCCUCGCCGCCAUAGGUGGCGGUGg -3' miRNA: 3'- -ACAGGAGCGGCGGUAUCCACCGCCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home