Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 26972 | 1.09 | 0.000563 |
Target: 5'- aUGUCCUCGCCGCCAUAGGUGGCGGUGg -3' miRNA: 3'- -ACAGGAGCGGCGGUAUCCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 44835 | 0.78 | 0.09899 |
Target: 5'- aGUCCUCGacgucgaaggCGCCGcAGGUGGUGGUGa -3' miRNA: 3'- aCAGGAGCg---------GCGGUaUCCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 25925 | 0.75 | 0.155756 |
Target: 5'- cGUCCUgGaUUGCCAUGagcaccgcGGUGGCGGUGa -3' miRNA: 3'- aCAGGAgC-GGCGGUAU--------CCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 47174 | 0.7 | 0.321119 |
Target: 5'- --aCCUCGaCGCCAagguGGUGGCGGg- -3' miRNA: 3'- acaGGAGCgGCGGUau--CCACCGCCac -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 19501 | 0.7 | 0.321119 |
Target: 5'- cGUCCUCGUCGCCcguGUAGGUcuGGauGUa -3' miRNA: 3'- aCAGGAGCGGCGG---UAUCCA--CCgcCAc -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 30676 | 0.7 | 0.360265 |
Target: 5'- gGUCaagCUCGCCuuccaucacgGCCcu-GGUGGCGGUGc -3' miRNA: 3'- aCAG---GAGCGG----------CGGuauCCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 65612 | 0.7 | 0.360265 |
Target: 5'- cUG-CUUCGCCGCCAagUGGcGUGGCGa-- -3' miRNA: 3'- -ACaGGAGCGGCGGU--AUC-CACCGCcac -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 57805 | 0.7 | 0.360265 |
Target: 5'- cG-CCgCGCCGCCG-AGGUGGCGa-- -3' miRNA: 3'- aCaGGaGCGGCGGUaUCCACCGCcac -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 50930 | 0.69 | 0.368484 |
Target: 5'- -cUCUUCGgCGagcUGGGUGGCGGUGg -3' miRNA: 3'- acAGGAGCgGCgguAUCCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 49434 | 0.69 | 0.3939 |
Target: 5'- cGcCCgcggCGCCGCCGU-GGcGGaCGGUGa -3' miRNA: 3'- aCaGGa---GCGGCGGUAuCCaCC-GCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 65719 | 0.69 | 0.411463 |
Target: 5'- uUGUCCUCGCCacGCCAcu--UGGCGGc- -3' miRNA: 3'- -ACAGGAGCGG--CGGUauccACCGCCac -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 14670 | 0.69 | 0.411463 |
Target: 5'- gGUgCCgaaggcgacUGCgGCCGU-GGUGGCGGUGg -3' miRNA: 3'- aCA-GGa--------GCGgCGGUAuCCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 47206 | 0.68 | 0.420424 |
Target: 5'- cGUUCUCGUCGCuCAgcGGcGGCGGc- -3' miRNA: 3'- aCAGGAGCGGCG-GUauCCaCCGCCac -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 18298 | 0.68 | 0.442404 |
Target: 5'- aGUCCUCGaCUGgcggucagcagccuuCCGguucguccGGUGGCGGUGg -3' miRNA: 3'- aCAGGAGC-GGC---------------GGUau------CCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 3046 | 0.68 | 0.46693 |
Target: 5'- gGUCCUCGCUGgugaacUCGgcgcGcGUGGCGGUGc -3' miRNA: 3'- aCAGGAGCGGC------GGUau--C-CACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 48028 | 0.67 | 0.486265 |
Target: 5'- cUGUCUUCGCC-CCAUgcgagguagAGGUuGCGGUu -3' miRNA: 3'- -ACAGGAGCGGcGGUA---------UCCAcCGCCAc -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 40755 | 0.67 | 0.486265 |
Target: 5'- cUGUggaUUCGCCGCCuUAcGUGGCGGa- -3' miRNA: 3'- -ACAg--GAGCGGCGGuAUcCACCGCCac -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 9420 | 0.67 | 0.49509 |
Target: 5'- aUGUUCUUGCCGCCGUugaccGGGUugccguaGGCGuUGc -3' miRNA: 3'- -ACAGGAGCGGCGGUA-----UCCA-------CCGCcAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 57879 | 0.67 | 0.505972 |
Target: 5'- cGUggUCGCgGUCuccGGUGGCGGUGu -3' miRNA: 3'- aCAggAGCGgCGGuauCCACCGCCAC- -5' |
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18290 | 3' | -59.7 | NC_004681.1 | + | 30346 | 0.67 | 0.505972 |
Target: 5'- cGUaCCggcCGCCGCCGcu-GUGGCGGg- -3' miRNA: 3'- aCA-GGa--GCGGCGGUaucCACCGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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