Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 3046 | 0.68 | 0.46693 |
Target: 5'- gGUCCUCGCUGgugaacUCGgcgcGcGUGGCGGUGc -3' miRNA: 3'- aCAGGAGCGGC------GGUau--C-CACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 9420 | 0.67 | 0.49509 |
Target: 5'- aUGUUCUUGCCGCCGUugaccGGGUugccguaGGCGuUGc -3' miRNA: 3'- -ACAGGAGCGGCGGUA-----UCCA-------CCGCcAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 10545 | 0.67 | 0.515953 |
Target: 5'- gGUCCUCcuaGCUaaGCCA-GGGUGGCGaUGa -3' miRNA: 3'- aCAGGAG---CGG--CGGUaUCCACCGCcAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 12492 | 0.67 | 0.515953 |
Target: 5'- --aCCgacgagCGUCGCCGc-GGUGGUGGUGc -3' miRNA: 3'- acaGGa-----GCGGCGGUauCCACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 14670 | 0.69 | 0.411463 |
Target: 5'- gGUgCCgaaggcgacUGCgGCCGU-GGUGGCGGUGg -3' miRNA: 3'- aCA-GGa--------GCGgCGGUAuCCACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 18298 | 0.68 | 0.442404 |
Target: 5'- aGUCCUCGaCUGgcggucagcagccuuCCGguucguccGGUGGCGGUGg -3' miRNA: 3'- aCAGGAGC-GGC---------------GGUau------CCACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 19501 | 0.7 | 0.321119 |
Target: 5'- cGUCCUCGUCGCCcguGUAGGUcuGGauGUa -3' miRNA: 3'- aCAGGAGCGGCGG---UAUCCA--CCgcCAc -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 20662 | 0.67 | 0.515953 |
Target: 5'- -uUCCgccagCGCCGCCAUuuGUgcGGCGGUu -3' miRNA: 3'- acAGGa----GCGGCGGUAucCA--CCGCCAc -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 25021 | 0.66 | 0.577286 |
Target: 5'- aGUCgaCGCCGCgCAgaaGGGUGGCa--- -3' miRNA: 3'- aCAGgaGCGGCG-GUa--UCCACCGccac -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 25925 | 0.75 | 0.155756 |
Target: 5'- cGUCCUgGaUUGCCAUGagcaccgcGGUGGCGGUGa -3' miRNA: 3'- aCAGGAgC-GGCGGUAU--------CCACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 26972 | 1.09 | 0.000563 |
Target: 5'- aUGUCCUCGCCGCCAUAGGUGGCGGUGg -3' miRNA: 3'- -ACAGGAGCGGCGGUAUCCACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 27458 | 0.66 | 0.553522 |
Target: 5'- gGUUC-CGCCGUUgagggucagcucgaAUGGG-GGCGGUGu -3' miRNA: 3'- aCAGGaGCGGCGG--------------UAUCCaCCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 30346 | 0.67 | 0.505972 |
Target: 5'- cGUaCCggcCGCCGCCGcu-GUGGCGGg- -3' miRNA: 3'- aCA-GGa--GCGGCGGUaucCACCGCCac -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 30676 | 0.7 | 0.360265 |
Target: 5'- gGUCaagCUCGCCuuccaucacgGCCcu-GGUGGCGGUGc -3' miRNA: 3'- aCAG---GAGCGG----------CGGuauCCACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 40755 | 0.67 | 0.486265 |
Target: 5'- cUGUggaUUCGCCGCCuUAcGUGGCGGa- -3' miRNA: 3'- -ACAg--GAGCGGCGGuAUcCACCGCCac -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 41675 | 0.66 | 0.577286 |
Target: 5'- cG-CCgugCGCUGCCugcgGGGUGGCGcUGc -3' miRNA: 3'- aCaGGa--GCGGCGGua--UCCACCGCcAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 44835 | 0.78 | 0.09899 |
Target: 5'- aGUCCUCGacgucgaaggCGCCGcAGGUGGUGGUGa -3' miRNA: 3'- aCAGGAGCg---------GCGGUaUCCACCGCCAC- -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 47174 | 0.7 | 0.321119 |
Target: 5'- --aCCUCGaCGCCAagguGGUGGCGGg- -3' miRNA: 3'- acaGGAGCgGCGGUau--CCACCGCCac -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 47206 | 0.68 | 0.420424 |
Target: 5'- cGUUCUCGUCGCuCAgcGGcGGCGGc- -3' miRNA: 3'- aCAGGAGCGGCG-GUauCCaCCGCCac -5' |
|||||||
18290 | 3' | -59.7 | NC_004681.1 | + | 48028 | 0.67 | 0.486265 |
Target: 5'- cUGUCUUCGCC-CCAUgcgagguagAGGUuGCGGUu -3' miRNA: 3'- -ACAGGAGCGGcGGUA---------UCCAcCGCCAc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home