miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18290 5' -54.5 NC_004681.1 + 12681 0.66 0.869292
Target:  5'- aCCGCcGCGGagCUCAaccGUAugGAGGCu -3'
miRNA:   3'- gGGUGaCGCCa-GGGUc--CAUugCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 19740 0.66 0.869292
Target:  5'- gCCGCUGCcGUCCCAGGcuuGCc---- -3'
miRNA:   3'- gGGUGACGcCAGGGUCCau-UGcuucg -5'
18290 5' -54.5 NC_004681.1 + 64914 0.66 0.861426
Target:  5'- uCCCGCgGCGcccgCCUggagcacgAGGUGGCGAcGCg -3'
miRNA:   3'- -GGGUGaCGCca--GGG--------UCCAUUGCUuCG- -5'
18290 5' -54.5 NC_004681.1 + 1517 0.66 0.853333
Target:  5'- uCCCGCUuCGGacucacCCCuGGUGACcGGGCc -3'
miRNA:   3'- -GGGUGAcGCCa-----GGGuCCAUUGcUUCG- -5'
18290 5' -54.5 NC_004681.1 + 53835 0.66 0.853333
Target:  5'- uUCACUGCGGcaCUCcGGUGAgGAuGGCg -3'
miRNA:   3'- gGGUGACGCCa-GGGuCCAUUgCU-UCG- -5'
18290 5' -54.5 NC_004681.1 + 39192 0.66 0.853333
Target:  5'- gCCCGCgcagGUGGcCaCCAGGgcuugcACGgcGCg -3'
miRNA:   3'- -GGGUGa---CGCCaG-GGUCCau----UGCuuCG- -5'
18290 5' -54.5 NC_004681.1 + 44461 0.66 0.853333
Target:  5'- gCCCGuaggGUcaGGUCUCGGG-GACGAAGUg -3'
miRNA:   3'- -GGGUga--CG--CCAGGGUCCaUUGCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 59827 0.66 0.84502
Target:  5'- aUCGCUGCcGaCCCAGGUucCGAguguuGGCa -3'
miRNA:   3'- gGGUGACGcCaGGGUCCAuuGCU-----UCG- -5'
18290 5' -54.5 NC_004681.1 + 23540 0.66 0.836495
Target:  5'- aCCCaucagaACUGCGGgaguggCCgAGGUcGACGGugaacAGCg -3'
miRNA:   3'- -GGG------UGACGCCa-----GGgUCCA-UUGCU-----UCG- -5'
18290 5' -54.5 NC_004681.1 + 55339 0.66 0.836495
Target:  5'- aCCGCUauaacgagcucuGCGGagUCGGGauUGACGAAGUg -3'
miRNA:   3'- gGGUGA------------CGCCagGGUCC--AUUGCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 24992 0.66 0.833897
Target:  5'- gCCCACuUGCcggGGUCgCCGcccucgccauugcuGGUGAgGGAGCc -3'
miRNA:   3'- -GGGUG-ACG---CCAG-GGU--------------CCAUUgCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 2128 0.67 0.818842
Target:  5'- cCCCGCugaUGUGGUaaCCCggcAGGUuGCGcGGCg -3'
miRNA:   3'- -GGGUG---ACGCCA--GGG---UCCAuUGCuUCG- -5'
18290 5' -54.5 NC_004681.1 + 60151 0.67 0.818842
Target:  5'- gCCACggucaGcCGGUgCCAGGUGcgGGAGCc -3'
miRNA:   3'- gGGUGa----C-GCCAgGGUCCAUugCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 29585 0.67 0.809732
Target:  5'- gCCACcgagGUGGUCCC-GGUGAgGGAc- -3'
miRNA:   3'- gGGUGa---CGCCAGGGuCCAUUgCUUcg -5'
18290 5' -54.5 NC_004681.1 + 44888 0.67 0.809732
Target:  5'- gCCCACcuccaggGCGGUCCagAGGUcccacgaguUGAAGCc -3'
miRNA:   3'- -GGGUGa------CGCCAGGg-UCCAuu-------GCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 34194 0.67 0.809732
Target:  5'- uCCCACaGCGuUCCCccuguGGUugagacucGGCGggGCc -3'
miRNA:   3'- -GGGUGaCGCcAGGGu----CCA--------UUGCuuCG- -5'
18290 5' -54.5 NC_004681.1 + 17925 0.67 0.800445
Target:  5'- aCUCAa-GCGGUCCCcgcAGGUGAgugcCGAGGg -3'
miRNA:   3'- -GGGUgaCGCCAGGG---UCCAUU----GCUUCg -5'
18290 5' -54.5 NC_004681.1 + 52019 0.67 0.800445
Target:  5'- uCCCGCUGcCGGgugcgcaagCCCAaGGUggUGAuGGUc -3'
miRNA:   3'- -GGGUGAC-GCCa--------GGGU-CCAuuGCU-UCG- -5'
18290 5' -54.5 NC_004681.1 + 28806 0.67 0.800445
Target:  5'- gUCACUgaGCGGUCCCAu---GCGAccAGCg -3'
miRNA:   3'- gGGUGA--CGCCAGGGUccauUGCU--UCG- -5'
18290 5' -54.5 NC_004681.1 + 31701 0.67 0.800445
Target:  5'- aCC-CU-CG--UCCAGGUGACGAAGCg -3'
miRNA:   3'- gGGuGAcGCcaGGGUCCAUUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.