miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18290 5' -54.5 NC_004681.1 + 10554 0.67 0.799507
Target:  5'- uUCCAUgGgGGUCCUccuagcuaagccaGGGUGGCGAugacguAGCg -3'
miRNA:   3'- -GGGUGaCgCCAGGG-------------UCCAUUGCU------UCG- -5'
18290 5' -54.5 NC_004681.1 + 21429 0.67 0.788124
Target:  5'- gCCGCUGCGGUCgaCCAcGUccacGACGAuggucgccuucuucAGCg -3'
miRNA:   3'- gGGUGACGCCAG--GGUcCA----UUGCU--------------UCG- -5'
18290 5' -54.5 NC_004681.1 + 4449 0.67 0.781381
Target:  5'- uCCgACUGCGGgaaUAGGUAGCaaaucGAGCa -3'
miRNA:   3'- -GGgUGACGCCaggGUCCAUUGc----UUCG- -5'
18290 5' -54.5 NC_004681.1 + 65853 0.67 0.780411
Target:  5'- aCCACUggacgucgaaGCGaucaccGUUCCAGGUGACGAcgaugucGGCc -3'
miRNA:   3'- gGGUGA----------CGC------CAGGGUCCAUUGCU-------UCG- -5'
18290 5' -54.5 NC_004681.1 + 1639 0.68 0.771623
Target:  5'- gCCCAgCUGaaggcuggccCGGUCaCCAGGggugagucCGAAGCg -3'
miRNA:   3'- -GGGU-GAC----------GCCAG-GGUCCauu-----GCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 57799 0.68 0.751708
Target:  5'- aCCACgcgccGCGccgCCgAGGUGGCGAAGg -3'
miRNA:   3'- gGGUGa----CGCca-GGgUCCAUUGCUUCg -5'
18290 5' -54.5 NC_004681.1 + 60574 0.68 0.741572
Target:  5'- uCCCGCUGCGcaagCUCGGGUu-CGucGCu -3'
miRNA:   3'- -GGGUGACGCca--GGGUCCAuuGCuuCG- -5'
18290 5' -54.5 NC_004681.1 + 61028 0.68 0.720997
Target:  5'- cUCCACUGUGGUUCCGcugcccGCGAAGg -3'
miRNA:   3'- -GGGUGACGCCAGGGUccau--UGCUUCg -5'
18290 5' -54.5 NC_004681.1 + 28555 0.69 0.710579
Target:  5'- gCCCGCaggcaaggaccuUGCauucagcuggggGGUCCCAguGGUGACGAccaAGCc -3'
miRNA:   3'- -GGGUG------------ACG------------CCAGGGU--CCAUUGCU---UCG- -5'
18290 5' -54.5 NC_004681.1 + 61092 0.69 0.700087
Target:  5'- cCCCgaGCUGCGGUucaCCCAaGGUGGgcAGGCc -3'
miRNA:   3'- -GGG--UGACGCCA---GGGU-CCAUUgcUUCG- -5'
18290 5' -54.5 NC_004681.1 + 16544 0.69 0.689533
Target:  5'- cCCCACgGCGG-CCguGGUaugcagcuugccGACGAGcGCu -3'
miRNA:   3'- -GGGUGaCGCCaGGguCCA------------UUGCUU-CG- -5'
18290 5' -54.5 NC_004681.1 + 19208 0.69 0.672541
Target:  5'- aCCCAgCUGCGaaccucgcgccggguGUCCUGGGUggUGAcGCc -3'
miRNA:   3'- -GGGU-GACGC---------------CAGGGUCCAuuGCUuCG- -5'
18290 5' -54.5 NC_004681.1 + 7436 0.7 0.657596
Target:  5'- gCCGCggcgGCGGggucagcCCCGGGUGcCGggGg -3'
miRNA:   3'- gGGUGa---CGCCa------GGGUCCAUuGCuuCg -5'
18290 5' -54.5 NC_004681.1 + 16442 0.7 0.657596
Target:  5'- aCCCAUgGUGGUCUCGgcguGGUGGCGuuccAGCc -3'
miRNA:   3'- -GGGUGaCGCCAGGGU----CCAUUGCu---UCG- -5'
18290 5' -54.5 NC_004681.1 + 53686 0.7 0.614743
Target:  5'- aCCCACUGCGGgagguggaggaCCUugccGGUGGCGAcGUu -3'
miRNA:   3'- -GGGUGACGCCa----------GGGu---CCAUUGCUuCG- -5'
18290 5' -54.5 NC_004681.1 + 65289 0.7 0.614743
Target:  5'- uCCCACcagGCG--UCCAGGUGGCGcuuGGCg -3'
miRNA:   3'- -GGGUGa--CGCcaGGGUCCAUUGCu--UCG- -5'
18290 5' -54.5 NC_004681.1 + 63946 0.71 0.604043
Target:  5'- cCCCA--GUGGUCCCGGGUAuaGggGa -3'
miRNA:   3'- -GGGUgaCGCCAGGGUCCAUugCuuCg -5'
18290 5' -54.5 NC_004681.1 + 41922 0.71 0.572114
Target:  5'- gCCCGCUGCaGGgaaaugcCCCGGGaGGCGgcGUc -3'
miRNA:   3'- -GGGUGACG-CCa------GGGUCCaUUGCuuCG- -5'
18290 5' -54.5 NC_004681.1 + 16348 0.71 0.561554
Target:  5'- cUCCGCUGCGGcggUGGGUGGCGAcgagGGCg -3'
miRNA:   3'- -GGGUGACGCCaggGUCCAUUGCU----UCG- -5'
18290 5' -54.5 NC_004681.1 + 13227 0.71 0.561554
Target:  5'- gCCACgaaggGCGGUggCGGGcAGCGggGCg -3'
miRNA:   3'- gGGUGa----CGCCAggGUCCaUUGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.