miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18290 5' -54.5 NC_004681.1 + 16348 0.71 0.561554
Target:  5'- cUCCGCUGCGGcggUGGGUGGCGAcgagGGCg -3'
miRNA:   3'- -GGGUGACGCCaggGUCCAUUGCU----UCG- -5'
18290 5' -54.5 NC_004681.1 + 12681 0.66 0.869292
Target:  5'- aCCGCcGCGGagCUCAaccGUAugGAGGCu -3'
miRNA:   3'- gGGUGaCGCCa-GGGUc--CAUugCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 64914 0.66 0.861426
Target:  5'- uCCCGCgGCGcccgCCUggagcacgAGGUGGCGAcGCg -3'
miRNA:   3'- -GGGUGaCGCca--GGG--------UCCAUUGCUuCG- -5'
18290 5' -54.5 NC_004681.1 + 1517 0.66 0.853333
Target:  5'- uCCCGCUuCGGacucacCCCuGGUGACcGGGCc -3'
miRNA:   3'- -GGGUGAcGCCa-----GGGuCCAUUGcUUCG- -5'
18290 5' -54.5 NC_004681.1 + 55339 0.66 0.836495
Target:  5'- aCCGCUauaacgagcucuGCGGagUCGGGauUGACGAAGUg -3'
miRNA:   3'- gGGUGA------------CGCCagGGUCC--AUUGCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 2128 0.67 0.818842
Target:  5'- cCCCGCugaUGUGGUaaCCCggcAGGUuGCGcGGCg -3'
miRNA:   3'- -GGGUG---ACGCCA--GGG---UCCAuUGCuUCG- -5'
18290 5' -54.5 NC_004681.1 + 34194 0.67 0.809732
Target:  5'- uCCCACaGCGuUCCCccuguGGUugagacucGGCGggGCc -3'
miRNA:   3'- -GGGUGaCGCcAGGGu----CCA--------UUGCuuCG- -5'
18290 5' -54.5 NC_004681.1 + 52019 0.67 0.800445
Target:  5'- uCCCGCUGcCGGgugcgcaagCCCAaGGUggUGAuGGUc -3'
miRNA:   3'- -GGGUGAC-GCCa--------GGGU-CCAuuGCU-UCG- -5'
18290 5' -54.5 NC_004681.1 + 17925 0.67 0.800445
Target:  5'- aCUCAa-GCGGUCCCcgcAGGUGAgugcCGAGGg -3'
miRNA:   3'- -GGGUgaCGCCAGGG---UCCAUU----GCUUCg -5'
18290 5' -54.5 NC_004681.1 + 63946 0.71 0.604043
Target:  5'- cCCCA--GUGGUCCCGGGUAuaGggGa -3'
miRNA:   3'- -GGGUgaCGCCAGGGUCCAUugCuuCg -5'
18290 5' -54.5 NC_004681.1 + 16442 0.7 0.657596
Target:  5'- aCCCAUgGUGGUCUCGgcguGGUGGCGuuccAGCc -3'
miRNA:   3'- -GGGUGaCGCCAGGGU----CCAUUGCu---UCG- -5'
18290 5' -54.5 NC_004681.1 + 16544 0.69 0.689533
Target:  5'- cCCCACgGCGG-CCguGGUaugcagcuugccGACGAGcGCu -3'
miRNA:   3'- -GGGUGaCGCCaGGguCCA------------UUGCUU-CG- -5'
18290 5' -54.5 NC_004681.1 + 61092 0.69 0.700087
Target:  5'- cCCCgaGCUGCGGUucaCCCAaGGUGGgcAGGCc -3'
miRNA:   3'- -GGG--UGACGCCA---GGGU-CCAUUgcUUCG- -5'
18290 5' -54.5 NC_004681.1 + 28555 0.69 0.710579
Target:  5'- gCCCGCaggcaaggaccuUGCauucagcuggggGGUCCCAguGGUGACGAccaAGCc -3'
miRNA:   3'- -GGGUG------------ACG------------CCAGGGU--CCAUUGCU---UCG- -5'
18290 5' -54.5 NC_004681.1 + 57799 0.68 0.751708
Target:  5'- aCCACgcgccGCGccgCCgAGGUGGCGAAGg -3'
miRNA:   3'- gGGUGa----CGCca-GGgUCCAUUGCUUCg -5'
18290 5' -54.5 NC_004681.1 + 19740 0.66 0.869292
Target:  5'- gCCGCUGCcGUCCCAGGcuuGCc---- -3'
miRNA:   3'- gGGUGACGcCAGGGUCCau-UGcuucg -5'
18290 5' -54.5 NC_004681.1 + 35355 0.77 0.298233
Target:  5'- gCCCGCUG-GGUgUCGGGauggAGCGAGGCg -3'
miRNA:   3'- -GGGUGACgCCAgGGUCCa---UUGCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 14660 0.74 0.4129
Target:  5'- gCgACUGCGG-CCguGGUGGCGGuGGCg -3'
miRNA:   3'- gGgUGACGCCaGGguCCAUUGCU-UCG- -5'
18290 5' -54.5 NC_004681.1 + 60210 0.72 0.540602
Target:  5'- aCCCGCUGCcGUacagCCAGGcGAUGGAGUc -3'
miRNA:   3'- -GGGUGACGcCAg---GGUCCaUUGCUUCG- -5'
18290 5' -54.5 NC_004681.1 + 13227 0.71 0.561554
Target:  5'- gCCACgaaggGCGGUggCGGGcAGCGggGCg -3'
miRNA:   3'- gGGUGa----CGCCAggGUCCaUUGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.