miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 14589 0.65 0.670998
Target:  5'- aGCaCCGGCCACcaGCgcgcccugcucggCGGAGGCGGCg -3'
miRNA:   3'- -UGcGGCUGGUGccUGa------------GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 47143 0.66 0.668913
Target:  5'- cGCGCuCGugCAcauccucgucgggguCGGGCUCGucGGUGGg -3'
miRNA:   3'- -UGCG-GCugGU---------------GCCUGAGCuuCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 65862 0.66 0.668913
Target:  5'- cCGCCucaaACCACuGGACgUCGAagcgaucaccguuccAGGUGACg -3'
miRNA:   3'- uGCGGc---UGGUG-CCUG-AGCU---------------UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 42361 0.66 0.664739
Target:  5'- -aGCCGcaaguGCCGCGca-UCGGAGGCGuACg -3'
miRNA:   3'- ugCGGC-----UGGUGCcugAGCUUCCGC-UG- -5'
18291 3' -58.5 NC_004681.1 + 28860 0.66 0.664739
Target:  5'- -aGCUgGGCCACGaACUCcauGGCGACa -3'
miRNA:   3'- ugCGG-CUGGUGCcUGAGcuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61481 0.66 0.655333
Target:  5'- cCGCCGACCuuGGACacgCGAGcuguugcccaccgcaGCGACg -3'
miRNA:   3'- uGCGGCUGGugCCUGa--GCUUc--------------CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 64014 0.66 0.65324
Target:  5'- aGCGcCCGACa--GGACUCGAaccugcauaaccuGGGUGGa -3'
miRNA:   3'- -UGC-GGCUGgugCCUGAGCU-------------UCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 6890 0.66 0.6501
Target:  5'- gACGUCGACCACGGcauguccguggccACcaccgugggcucguUCcaccccuacuuuGAGGGCGACa -3'
miRNA:   3'- -UGCGGCUGGUGCC-------------UG--------------AG------------CUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 30137 0.66 0.643816
Target:  5'- -aGgCGGCCuguggguCGGGCUC--AGGCGGCg -3'
miRNA:   3'- ugCgGCUGGu------GCCUGAGcuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 51588 0.66 0.640673
Target:  5'- -aGCCGAgCugGcGGCagcggucgcccaguUCGAugAGGCGACg -3'
miRNA:   3'- ugCGGCUgGugC-CUG--------------AGCU--UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 42615 0.66 0.632288
Target:  5'- gAUGCCGggggcgcauuccuGCCAgcgguCGGGCUCGAAGccuuCGACa -3'
miRNA:   3'- -UGCGGC-------------UGGU-----GCCUGAGCUUCc---GCUG- -5'
18291 3' -58.5 NC_004681.1 + 51272 0.66 0.622854
Target:  5'- gGCGCCGAggaCUGCuGACUCGgcGGCu-- -3'
miRNA:   3'- -UGCGGCU---GGUGcCUGAGCuuCCGcug -5'
18291 3' -58.5 NC_004681.1 + 12587 0.66 0.622854
Target:  5'- cUGCCuuCCGCGGucacCUUGAAGGUGuACg -3'
miRNA:   3'- uGCGGcuGGUGCCu---GAGCUUCCGC-UG- -5'
18291 3' -58.5 NC_004681.1 + 60605 0.66 0.622854
Target:  5'- cCGCCG-CUGCGGcACUUGAcgagcAGaGCGGCa -3'
miRNA:   3'- uGCGGCuGGUGCC-UGAGCU-----UC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 68234 0.66 0.622854
Target:  5'- aACGCCG-CCACGGucucaucgACUaCGccGuGCGACg -3'
miRNA:   3'- -UGCGGCuGGUGCC--------UGA-GCuuC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 60555 0.66 0.622854
Target:  5'- cACGCCGcacGCCuCGGGC-CGcuGGcCGACg -3'
miRNA:   3'- -UGCGGC---UGGuGCCUGaGCuuCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 45074 0.66 0.619711
Target:  5'- cCGCCGcggucgaggcccucGCCGCGGuCUCGcucaagaccGGGGcCGACg -3'
miRNA:   3'- uGCGGC--------------UGGUGCCuGAGC---------UUCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 23348 0.67 0.61238
Target:  5'- cACGCCaaaucuCCGCgGGACUCGggGGguUGAg -3'
miRNA:   3'- -UGCGGcu----GGUG-CCUGAGCuuCC--GCUg -5'
18291 3' -58.5 NC_004681.1 + 25236 0.67 0.601922
Target:  5'- aACGgCGGCCAUGGcGCcCGc-GGCGGCg -3'
miRNA:   3'- -UGCgGCUGGUGCC-UGaGCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 6303 0.67 0.600877
Target:  5'- -gGCCuGCCGCGGucggaugACcCGAAGGcCGACg -3'
miRNA:   3'- ugCGGcUGGUGCC-------UGaGCUUCC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.