miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 31725 0.7 0.386101
Target:  5'- gAUGCCGcACCA-GGugUCGAuuacacccucguccAGGUGACg -3'
miRNA:   3'- -UGCGGC-UGGUgCCugAGCU--------------UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 46946 0.7 0.388667
Target:  5'- cCGCCGACU-CGGGCgacAAGGCGAUg -3'
miRNA:   3'- uGCGGCUGGuGCCUGagcUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 44681 0.7 0.406057
Target:  5'- uGCGgCGGCCGCGaGCgCGgcGGCGAUg -3'
miRNA:   3'- -UGCgGCUGGUGCcUGaGCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61154 0.7 0.409593
Target:  5'- aACGCCG-CCGCGacgcccagggcaacuGGgUCGAcGGCGACg -3'
miRNA:   3'- -UGCGGCuGGUGC---------------CUgAGCUuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 22720 0.7 0.414934
Target:  5'- gGCGCUGcCCGCGGugUCcguggagaaGGAGGUGGg -3'
miRNA:   3'- -UGCGGCuGGUGCCugAG---------CUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 41732 0.7 0.433039
Target:  5'- gGCGuuGGCCA-GGaACUUGGAGGUGGg -3'
miRNA:   3'- -UGCggCUGGUgCC-UGAGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 25049 0.7 0.433039
Target:  5'- cACGgUGACCGCagaGGGCggCGcGGGCGGCa -3'
miRNA:   3'- -UGCgGCUGGUG---CCUGa-GCuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 41977 0.69 0.442262
Target:  5'- gGCGCUGACCu--GACcuacgCGggGGCGAUc -3'
miRNA:   3'- -UGCGGCUGGugcCUGa----GCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 53835 0.69 0.461036
Target:  5'- uUGCCuucuucauggagGGCCauGCGGACUgGggGGUGGCc -3'
miRNA:   3'- uGCGG------------CUGG--UGCCUGAgCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 2412 0.69 0.470579
Target:  5'- gGCGCCGACCuCGGuGCauucgaugucaUCGAGGGUGu- -3'
miRNA:   3'- -UGCGGCUGGuGCC-UG-----------AGCUUCCGCug -5'
18291 3' -58.5 NC_004681.1 + 13676 0.69 0.480222
Target:  5'- -gGCCGcCCGCGGcCUUGAAGcGCG-Cg -3'
miRNA:   3'- ugCGGCuGGUGCCuGAGCUUC-CGCuG- -5'
18291 3' -58.5 NC_004681.1 + 8006 0.69 0.48996
Target:  5'- --uCCGGCUccucgGCGGcuucCUCGGAGGCGGCg -3'
miRNA:   3'- ugcGGCUGG-----UGCCu---GAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 14687 0.68 0.49979
Target:  5'- uCGCCaGCCAgcuugcCGGuGC-CGAAGGCGACu -3'
miRNA:   3'- uGCGGcUGGU------GCC-UGaGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 16201 0.68 0.506722
Target:  5'- -aGCCGuggcggcugugcgcGCCGCGGuggugacgccAC-CGAGGGCGGCa -3'
miRNA:   3'- ugCGGC--------------UGGUGCC----------UGaGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 50247 0.68 0.509706
Target:  5'- uUGCCGACUuggACGGAgaugccgccguCgucagCGAGGGCGAUg -3'
miRNA:   3'- uGCGGCUGG---UGCCU-----------Ga----GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 59688 0.68 0.519703
Target:  5'- aGCGCCG-CCACGcccccuGCUgGGAGuGCGGCc -3'
miRNA:   3'- -UGCGGCuGGUGCc-----UGAgCUUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 45201 0.68 0.519703
Target:  5'- gGCGUCGGCCcCGGuCUUGAGcgagaccgcGGCGAg -3'
miRNA:   3'- -UGCGGCUGGuGCCuGAGCUU---------CCGCUg -5'
18291 3' -58.5 NC_004681.1 + 32096 0.68 0.539921
Target:  5'- gGCGCCGAUCAgCGaGC-CGAugcuGGCGAUg -3'
miRNA:   3'- -UGCGGCUGGU-GCcUGaGCUu---CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 35607 0.68 0.539921
Target:  5'- cGCGCCGAguacugcauCUGCGGGuggUCGGaggaAGGCGACg -3'
miRNA:   3'- -UGCGGCU---------GGUGCCUg--AGCU----UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 10524 0.68 0.55013
Target:  5'- cGCGaaguCCGACCGCGGAauccCGcAGGCGGu -3'
miRNA:   3'- -UGC----GGCUGGUGCCUga--GCuUCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.