miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 10524 0.68 0.55013
Target:  5'- cGCGaaguCCGACCGCGGAauccCGcAGGCGGu -3'
miRNA:   3'- -UGC----GGCUGGUGCCUga--GCuUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 62700 0.68 0.55013
Target:  5'- gGCGCCGGaugagGCGGACggggUGggGGCGu- -3'
miRNA:   3'- -UGCGGCUgg---UGCCUGa---GCuuCCGCug -5'
18291 3' -58.5 NC_004681.1 + 12999 0.68 0.55013
Target:  5'- cCGCUGgcACCGCGGACgacgUGGccGCGACu -3'
miRNA:   3'- uGCGGC--UGGUGCCUGa---GCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 64343 0.67 0.557312
Target:  5'- -aGCUGGcgaagaagugaggcCCGCGGACaaggCGuGGGCGACa -3'
miRNA:   3'- ugCGGCU--------------GGUGCCUGa---GCuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 29502 0.67 0.560398
Target:  5'- gACGCCaGACCACGcGGuggUGGAGGCG-Cu -3'
miRNA:   3'- -UGCGG-CUGGUGC-CUga-GCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 29634 0.67 0.570718
Target:  5'- gACGUCGACCACG-AC-CGAuGGCaACa -3'
miRNA:   3'- -UGCGGCUGGUGCcUGaGCUuCCGcUG- -5'
18291 3' -58.5 NC_004681.1 + 15681 0.67 0.570718
Target:  5'- gACGUCGAgCACGc-CUCGGAGGUcaugGACa -3'
miRNA:   3'- -UGCGGCUgGUGCcuGAGCUUCCG----CUG- -5'
18291 3' -58.5 NC_004681.1 + 39304 0.67 0.570718
Target:  5'- -aGUCGACCAgGcugacguccucGACgUCGAGGGCGAg -3'
miRNA:   3'- ugCGGCUGGUgC-----------CUG-AGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 7464 0.67 0.577969
Target:  5'- --cUCGGCCGCGGGCUUGGcgggaggcuucgccGcGGCGGCg -3'
miRNA:   3'- ugcGGCUGGUGCCUGAGCU--------------U-CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 31827 0.67 0.581083
Target:  5'- gGCGCCuGCCAcuuCGGACa-GGAGcGCGAUg -3'
miRNA:   3'- -UGCGGcUGGU---GCCUGagCUUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 33296 0.67 0.581083
Target:  5'- gACGCCGgucgcGCCGCGGugUaCGccGG-GACg -3'
miRNA:   3'- -UGCGGC-----UGGUGCCugA-GCuuCCgCUG- -5'
18291 3' -58.5 NC_004681.1 + 44850 0.67 0.581083
Target:  5'- -aGCCGcCCGCGagggaguccucGACgUCGAAGGCGcCg -3'
miRNA:   3'- ugCGGCuGGUGC-----------CUG-AGCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 50391 0.67 0.581083
Target:  5'- aGCGUCGGCCGCGGGgacguggcccuuCUUGcgguGGGCG-Cg -3'
miRNA:   3'- -UGCGGCUGGUGCCU------------GAGCu---UCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 41263 0.67 0.590445
Target:  5'- aGCGCaGGCCGCGGagguGCUUGGacucaguGGGuCGACa -3'
miRNA:   3'- -UGCGgCUGGUGCC----UGAGCU-------UCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 64920 0.67 0.591487
Target:  5'- gGCGCCcGCCugGaGCaCGAGguGGCGACg -3'
miRNA:   3'- -UGCGGcUGGugCcUGaGCUU--CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 69148 0.67 0.591487
Target:  5'- gGCGCa-GCCAuCGGugUCGcAGGuGCGGCc -3'
miRNA:   3'- -UGCGgcUGGU-GCCugAGC-UUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 64930 0.67 0.591487
Target:  5'- gGCGCagguaccaGucCCACGGGgugccCUCGGAGGCGGg -3'
miRNA:   3'- -UGCGg-------Cu-GGUGCCU-----GAGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 42354 0.67 0.591487
Target:  5'- gGCGCCuuCCGCGGGCg-GGAccagcagcucGGCGGCc -3'
miRNA:   3'- -UGCGGcuGGUGCCUGagCUU----------CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 54490 0.67 0.595658
Target:  5'- gACGUCGACCAC---CUCGAacuccacacccagcuGGGUGGCg -3'
miRNA:   3'- -UGCGGCUGGUGccuGAGCU---------------UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 6303 0.67 0.600877
Target:  5'- -gGCCuGCCGCGGucggaugACcCGAAGGcCGACg -3'
miRNA:   3'- ugCGGcUGGUGCC-------UGaGCUUCC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.