miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 730 0.76 0.170371
Target:  5'- gGCGUCGAUCAcCGGGC-CGAAGGCG-Cg -3'
miRNA:   3'- -UGCGGCUGGU-GCCUGaGCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 2412 0.69 0.470579
Target:  5'- gGCGCCGACCuCGGuGCauucgaugucaUCGAGGGUGu- -3'
miRNA:   3'- -UGCGGCUGGuGCC-UG-----------AGCUUCCGCug -5'
18291 3' -58.5 NC_004681.1 + 6303 0.67 0.600877
Target:  5'- -gGCCuGCCGCGGucggaugACcCGAAGGcCGACg -3'
miRNA:   3'- ugCGGcUGGUGCC-------UGaGCUUCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 6500 0.71 0.380157
Target:  5'- uCGCU--CCACGGACUCGggGaagaccgagccGCGGCg -3'
miRNA:   3'- uGCGGcuGGUGCCUGAGCuuC-----------CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 6890 0.66 0.6501
Target:  5'- gACGUCGACCACGGcauguccguggccACcaccgugggcucguUCcaccccuacuuuGAGGGCGACa -3'
miRNA:   3'- -UGCGGCUGGUGCC-------------UG--------------AG------------CUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 7464 0.67 0.577969
Target:  5'- --cUCGGCCGCGGGCUUGGcgggaggcuucgccGcGGCGGCg -3'
miRNA:   3'- ugcGGCUGGUGCCUGAGCU--------------U-CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 8006 0.69 0.48996
Target:  5'- --uCCGGCUccucgGCGGcuucCUCGGAGGCGGCg -3'
miRNA:   3'- ugcGGCUGG-----UGCCu---GAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 10524 0.68 0.55013
Target:  5'- cGCGaaguCCGACCGCGGAauccCGcAGGCGGu -3'
miRNA:   3'- -UGC----GGCUGGUGCCUga--GCuUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 10763 0.75 0.193761
Target:  5'- cACGCgaCGGCCGCGGGCacCGggGGCGcCa -3'
miRNA:   3'- -UGCG--GCUGGUGCCUGa-GCuuCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 12587 0.66 0.622854
Target:  5'- cUGCCuuCCGCGGucacCUUGAAGGUGuACg -3'
miRNA:   3'- uGCGGcuGGUGCCu---GAGCUUCCGC-UG- -5'
18291 3' -58.5 NC_004681.1 + 12999 0.68 0.55013
Target:  5'- cCGCUGgcACCGCGGACgacgUGGccGCGACu -3'
miRNA:   3'- uGCGGC--UGGUGCCUGa---GCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 13676 0.69 0.480222
Target:  5'- -gGCCGcCCGCGGcCUUGAAGcGCG-Cg -3'
miRNA:   3'- ugCGGCuGGUGCCuGAGCUUC-CGCuG- -5'
18291 3' -58.5 NC_004681.1 + 14440 0.71 0.355385
Target:  5'- uACGCCGcCCGCGagg-CGGAGGCGAa -3'
miRNA:   3'- -UGCGGCuGGUGCcugaGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 14589 0.65 0.670998
Target:  5'- aGCaCCGGCCACcaGCgcgcccugcucggCGGAGGCGGCg -3'
miRNA:   3'- -UGcGGCUGGUGccUGa------------GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 14687 0.68 0.49979
Target:  5'- uCGCCaGCCAgcuugcCGGuGC-CGAAGGCGACu -3'
miRNA:   3'- uGCGGcUGGU------GCC-UGaGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 15681 0.67 0.570718
Target:  5'- gACGUCGAgCACGc-CUCGGAGGUcaugGACa -3'
miRNA:   3'- -UGCGGCUgGUGCcuGAGCUUCCG----CUG- -5'
18291 3' -58.5 NC_004681.1 + 16201 0.68 0.506722
Target:  5'- -aGCCGuggcggcugugcgcGCCGCGGuggugacgccAC-CGAGGGCGGCa -3'
miRNA:   3'- ugCGGC--------------UGGUGCC----------UGaGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 16685 0.68 0.55013
Target:  5'- -gGUCGACCGgGGACgcCGggGGCu-- -3'
miRNA:   3'- ugCGGCUGGUgCCUGa-GCuuCCGcug -5'
18291 3' -58.5 NC_004681.1 + 17687 0.72 0.295028
Target:  5'- cCGCCGAuaCCACGGcGCUUGGccGCGGCg -3'
miRNA:   3'- uGCGGCU--GGUGCC-UGAGCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 19401 0.74 0.242958
Target:  5'- gGCGCUGACCGagucgaaGGACUUccaGAAGGCGuCg -3'
miRNA:   3'- -UGCGGCUGGUg------CCUGAG---CUUCCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.